Panicum hallii (Hall's panicgrass): 112880160
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Entry
112880160 CDS
T07366
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03013
Nucleocytoplasmic transport
phai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112880160
03015 mRNA surveillance pathway
112880160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112880160
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112880160
5.6.2.5 RNA 5'-3' helicase
112880160
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112880160
mRNA cycle factors
Common to processing body (P body) and stress granule
112880160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NPHP3_N
nSTAND3
Helicase_RecD
ATPase
SRP54
PhoH
AAA_16
AAA_32
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
112880160
NCBI-ProteinID:
XP_025800441
LinkDB
All DBs
Position
2:50394302..50404731
Genome browser
AA seq
1272 aa
AA seq
DB search
MATQPPSSAAAADLYETASQPDPSASAAGDAYTFLEFNTQGDDFDYPDFPELSQPPPRSA
PLPPVAATASSSSSWPAPPPPPPDAASPEPDLAPQDVPTPPASSSSPSPRSASKARTSAA
ADGLASGVAALSFEEPVGAGAGEDGYDYGKGDFVEHACRYCGIHNPACVARCNVPSCRKW
FCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKSEN
VVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLSWLVKVPSEQEQLRARQISAQQIN
KVEELWKTNPDASLEDLEKPGVDDEPQAVVLKYEDAYQYQNVFAPLIKLEADYDKMMKES
QSKDNVTVRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYPGDSSHPTWQSVGHVIK
LTAQEEVALELRASQGVPTELSVGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHH
LLGHEVEHQIIRNTLPRRFGAPGLPELNASQVLAVKSVLQKPVSLIQGPPGTGKTVTSAA
IVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQ
VRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKSLKRATEREILQSADVICCTCVGAGD
PRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQ
SLFERLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFPWPVP
NRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAY
IVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVA
LTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYND
RRLFLGGGQGVMHGTNFGAGANPAADKRSGRGKGQSFVPYGPPNGVHKPGVHPAGYAVPR
MPFPPFPGAPHSQPYAIPTRGMHGPIGAVPPVPQPGSRNFGAPRSNTGGPIGGHLAHQQN
SQQAMGGIGSNFNYTGLENPSSQPSGGAQMSQTGLMTQMPVQGLSQTFRDGFSIGGMSQD
FFGDDFKSQGSHVPYNIADFSTQASQGGYGVEFTQAPQSGYSGNYMNQNAHPGYSHIGTT
NDIVSQDHMAHGSHGMFTQAGYNDPSQDESSQMHYGMASAGPLQSQNMMNPLYSQSYAHY
NTQPQSLQPPPQ
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcagccgccctcctccgccgcggccgccgacctctacgagacggcctcgcag
ccggacccctccgcctccgccgccggcgacgcctacaccttcctcgagttcaacacgcag
ggcgacgacttcgactaccccgatttcccggagctctcgcagccgccaccacgatccgcg
ccgctgccgcccgtcgccgccaccgcatcatcgtcctcgtcctggccggccccgccgccg
ccgccgcccgacgcggcctccccagagcccgatctcgcgccgcaggacgtccccaccccg
ccggcctcctcctcctcgccgtcgccgcgctccgcctccaaggcgcgaacgtctgccgcg
gcggatgggctcgcctccggggtcgccgcgctcagcttcgaggagcctgtaggcgctggc
gccggggaggatgggtacgactatggcaaaggcgacttcgtggaacatgcctgccggtac
tgtgggatccacaaccccgcttgcgtggccaggtgcaacgtgccctcctgccgcaagtgg
ttctgcaactcgcgggggaacacctctggctcccacattgtcaaccacctggtcagggcc
aagcataaggaagtgtgccttcacaaggatagccctttgggagaaacaattcttgaatgc
tataactgtggttgtcggaatgtatttcttcttgggtttatctcagcaaagtcggagaac
gttgttgttcttttgtgcagagagccatgtttgagtgtaaatgcattgaaggatatgaac
tgggatcttagtcaatggtgtcctcttattgatgacaggtgtttcttgtcatggcttgta
aaggtaccctcagaacaggagcagctaagagctcgtcaaattagtgctcagcaaattaac
aaagtagaagagctctggaagacaaatcctgatgcctcccttgaagacctggaaaagcct
ggtgtagatgatgaacctcaggcagtggttttgaaatatgaagacgcctaccagtatcaa
aatgtttttgctccgctgataaagcttgaggctgattatgacaagatgatgaaagagtcg
cagagcaaggataatgtaactgttcggtgggatattgggctgaacaagaagcgcgtagct
tacttcgtctttccaaaggaagataacgagttgaggcttgtgcccggagatgagctgcgc
ttgagatatcctggtgatagctcacatcccacatggcagtctgtggggcatgtgattaag
ctcactgcccaagaggaggtggcacttgagcttcgtgctagtcagggggtacccactgaa
ctaagcgttggattcagtgtggattttgtttggaaaagtactagctttgatagaatgcaa
ggagcaatgaaaactttcgccgtggatgagacaagtgtcagtggatacatataccatcac
cttttgggacatgaagttgagcatcaaataatacgtaataccctaccaagacgctttggt
gcaccaggacttccagaactaaatgcttcccaggttttagcagttaaaagtgtcctccag
aagccagttagtttgattcaaggtccacctggcactggaaaaactgtcacatctgctgca
attgtttatcacatggcaaaacaaggtcaaggacaggttcttgtatgcgcaccaagtaac
gttgctgttgatcaactggcggagaagataagctcaactggtctcaaggttgttaggctg
tgtgcaaaatctcgagaagctgtttcatctcctgttgagcatcttacacttcattatcag
gttaggcacctggatacatctgaaaagagtgaattgcacaagctacagcaactgaaagat
gagcaaggtgaattgtccagtagtgatgagaagaagtacaagtcactaaaacgtgccact
gaaagagagatactgcaaagtgctgatgtcatttgttgcacctgtgttggtgctggagat
ccccgtctttcaaacttccgtttccgacaagttcttattgatgagtccacacaggcaacg
gagcctgaatgtcttattcctttggtgctcggtgtcaagcaggttgttctcgttggagat
cattgccaattgggtccagtcatcatgtgcaaaaaagcagctcgtgcagggttagcacaa
tctctgtttgaacgccttgttatcctgggagtgaagccattcaggctacaggtccagtat
agaatgcacccttgcctctcagaatttccgtccaactgcttctatgaaggcacactgcaa
aatggagtaactgttaatgagaggcaatcatctggaattgattttccttggcctgttcca
aatcggcctatgttcttctatgtgcagatgggacaagaagagatcagtgctagtgggaca
tcatatctgaatagaactgaagctgcaaatgttgaaaaaattgtaacaacatttttaaga
agtggtgttgtaccaagccagattggagttatcacaccttatgaaggacaaagggcatac
attgtaaattacatgtcaaggaatggctctcttcgccaacaactttacaaggaaatcgag
gtagcaagtgtagactcgtttcagggaagagagaaagactacattattctgtcgtgtgtt
agaagcaatgagcaccagggaattgggtttctcaatgatccacgcaggttaaatgttgct
ctaactcgtgcacggtatggcatagttattcttgggaacccaaaagtattgagcaagcag
cccctttggaatagcttgttgacacattacaaggagcatgagtgtctggtagaaggacct
ttaaataacttaaagcagagtatggtgcaatttcagaagccaaaaaagatctataatgac
cggagattgttcctgggtggtggtcaaggtgttatgcatggaaccaactttggggctggg
gccaacccagcagcagataaaagaagtggtagggggaaaggacaatcatttgttccttat
ggccccccaaatggggttcataaacctggtgtgcacccagcgggctatgctgttcctcgt
atgccttttcctccatttcctggggctccacattctcaaccatatgcaattccaactcgt
ggaatgcatgggcccattggagctgttccaccggtgcctcaacctggaagtagaaatttt
ggggcacctcgttccaatacgggtggtcctattggtggccaccttgctcatcaacagaac
tctcagcaggctatgggtggcatagggtcaaactttaactacactggcttggagaatcct
agtagtcagccttctggtggagcccagatgtcccaaactggattgatgacacagatgcct
gtccaaggactcagtcaaacattccgtgatggtttttccattggtgggatgtctcaggac
ttcttcggagatgatttcaagagccaaggatctcatgtgccttacaacattgcagatttc
tctacccaggcttctcaaggtggttatggtgttgagtttactcaagcaccccaatctgga
tactctgggaattatatgaaccaaaatgcacatccaggatactcccacattggtacaacc
aatgacatcgtatctcaggatcacatggcccatggatctcatggaatgtttacacaagcg
ggatataatgatccctcgcaagatgagtcatctcagatgcattatggaatggcatctgct
ggccctctccagtcacagaacatgatgaaccccttatactctcaatcctatgcccactat
aacacccaaccacagtctcttcaacctcctccacagtga
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