Panicum hallii (Hall's panicgrass): 112880626
Help
Entry
112880626 CDS
T07366
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52B-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112880626
03041 Spliceosome [BR:
phai03041
]
112880626
03036 Chromosome and associated proteins [BR:
phai03036
]
112880626
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112880626
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112880626
mRNA cycle factors
Common to processing body (P body) and stress granule
112880626
Spliceosome [BR:
phai03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
112880626
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112880626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
112880626
NCBI-ProteinID:
XP_025801129
LinkDB
All DBs
Position
2:complement(4960846..4966636)
Genome browser
AA seq
650 aa
AA seq
DB search
MRSSWADSVANAEESAPATGAANGSVANHGNPRPTRSSYVPPHLRGRPAGAGLDAQAGSV
APAQGGPLPSAPAQPSGPAAAVGGPRWAGIVNGGGSGSVGAPRQGYGGGGRGGGGGGGGG
AWNSRPGGWDRRDREPDPFAKAEAEEVDFEGENTGINFDAYEDIPVETSGHDVPAPVNTF
AEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGI
LKSRPPQRQRSSRTACPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPITNQL
RELERGVEILVATPGRLMDLLERARVSLQNIMYLALDEADRMLDMGFEPQIRKIVEQMDM
PPRGQRQTMLFSATFPKEIQRMAADFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRSY
LMDLLHAQKANGTHGKQALTLVFVETKRGADALEDWLYRNGFPATSIHGDRTQQEREHAL
RSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAF
FNESNISLARQLSELMQEANQEVPQWLERYAARSVYGGGGGGRNRRSGGGARFGGRDFRR
DRGSGGYSGGGGAYGGGGGGGYGGSSGYGGGYGGGGGGGYGGGQSTSAWD
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgcgatcttcatgggctgactcagttgcgaacgccgaggaatcggcgcccgcgactggt
gctgctaacggatccgttgctaatcacggcaacccacgccccacccgcagctcctacgtg
cctcctcaccttcgtggccgtccggctggtgctggtcttgacgcccaagcaggctctgta
gcaccagcgcaaggtggcccactgccctcagctcccgcacagccttctggtccagcggct
gctgtcggtggccctcgctgggctggcattgttaatggtggtggcagtggaagtgtgggt
gctcctcgccagggttatggcggtgggggccgtggtggtggaggcggtggcggtgggggt
gcctggaactcccgtcctgggggttgggaccgcagagaccgtgagccggatccctttgcc
aaagctgaggcagaagaagttgacttcgagggtgagaacactggcatcaattttgatgcc
tatgaagacatccctgttgagaccagcggccacgatgtacccgcaccagtcaacacattc
gcagagattgatttgggtgatgcgctgaatgagaatatccggaggtgcaagtatgtgaaa
ccaacaccggtgcagcgttacgccatcccaatctccatcgctggacgggatcttatggcc
tgtgcacagactgggtctggaaaaactgcagccttctgtttcccaatcatcagtggcatc
ttgaagtcaagaccaccccagaggcagcgtagttcaaggactgcatgtcctctggctctg
atcttatctcccactcgtgagctttcagtccaaatccatgaagaagcaaggaagtttgca
tatcagactggtgtcagagtcgtggttgcatatggaggtgcaccgataacaaatcagctg
agggagttagaaagaggtgttgaaatcctggtggcaactcctggacgcttaatggatctg
ttggagagggctagagtctcactgcaaaacattatgtatttagctcttgatgaagctgat
cgaatgcttgatatgggtttcgagccacagatacgtaaaattgttgagcagatggacatg
cctccacgtggccagaggcagacaatgttgtttagtgctacattcccaaaagagatacag
aggatggctgcggatttccttgctgattacatctttcttgctgttgggagggttggttca
agtaccgatttgattgtccagagggtggagtttgtcctagatgcagacaaacgtagctac
ctcatggaccttcttcatgcgcaaaaggctaatggtacacatgggaagcaagctcttact
ttggtctttgtggagacaaagaggggggctgatgctctggaggactggctgtatagaaat
ggtttccctgcaactagcattcatggagacaggacacaacaggaaagggagcatgctctc
agatcattcaagagtggagcaactcccattcttgtggcaactgatgtcgctgctcgtggt
cttgacataccacatgttgctcatgtgatcaattttgacctcccaaatgatatagatgac
tatgtccatcgtattggaaggactgggcgtgctggcaaatctggcctggcgactgcattt
ttcaatgagagcaacatttcgctggcaaggcagttgagtgagctcatgcaagaggccaac
caggaggttcctcagtggcttgagcggtacgctgcccgttcagtctacggaggtggcggc
ggtggtagaaaccgcagatcaggtggcggtgccagatttggtggccgcgacttccggcga
gacaggggcagtggtgggtatagcggtggcggtggcgcttatggtggtggcggcggcggt
ggatatggggggtcatcgggatatggtggtggctacggaggaggcggcggcggcggctac
ggtggtggtcagagtacgagcgcttgggactga
DBGET
integrated database retrieval system
