Panicum hallii (Hall's panicgrass): 112880723
Help
Entry
112880723 CDS
T07366
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
phai
Panicum hallii (Hall's panicgrass)
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112880723
03036 Chromosome and associated proteins [BR:
phai03036
]
112880723
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112880723
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
112880723
SLIK complex
112880723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
HTH_CHD1_Hrp3
CHD1-like_C
ResIII
HDA2-3
DEAD
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
112880723
NCBI-ProteinID:
XP_025801256
LinkDB
All DBs
Position
2:complement(56195133..56209905)
Genome browser
AA seq
1725 aa
AA seq
DB search
MAFFSNSGSRADSGGYNLNEKADDEGAYESVRDGGVDSNSRQWNLNEKAEDAYHSEPEQF
EAGQSSLYSSENTFGQHARRGGGPWGTNFLKDSRSNQTAKEVPSNRGMDAASSLDDMDGS
GEDDELNRANGDVPAEEMLSDDYYEQDGEEQIESLHRGGTKQSSCSTSGAATKSASRQKK
TKTKYNAYADDDDDEYNDENDDDDDADEDDPDDVDFEPDSETDKAVDKDKFMDSENSDGD
DDDELELSDDEDDDFAENRRQPKRLKVVATKTPKGRKLPMQAQRRRGMSHTDDEYSSGKE
SDVPSDADFNHRSKKPDRLHQKPVGRNDVAPINSHNELRTSGRRTVKKISYAESEESDDS
EKSTKQQKLKEEPEEEDGETIERVLWHQPKGVAEEAMRNDQSAQPTVVSLPSDFNQQWDE
LEFYIKWKGQSYLHCQWKTLSELQSVSGFKKVLNYTKRVAEEQRYKRALSREEVEVHDVG
KEMELDLIKQYSQVERIFADRVSKADGDDLVPEYLVKWQGLPYAESTWEKDTDIEFAQDA
IDEYKAREAATAILGKTVDFQRKKSKASLRRLDDQPEWLKGGKLRDYQLEGLNFLVNGWR
NDTNVILADEMGLGKTIQSVSMLGFLHNAQEINGPFLVVVPLSTLSNWAKEFRKWLPNMN
VVIYVGNRASREMCQQYEFFSDKKGGRHVKFHTLITTYEVILKDKAVLSKIKWNYLMVDE
AHRLKNCEASLYTTLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSKDSFVEKY
KNLSSFNETELANLHKELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILER
NFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSIGDRNKVERIVMSSGK
LVLLDKLLVRLRETNHRVLIFSQMVKMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEH
FNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNI
YRFVTCKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKESKKGGSMFDKNELSAILRF
GAEELFKEDKTDEETKRNLESLDIDEILERAEKVETKGGEGEEGNELLSAFKVANFSSGE
DDATFWSRLIQPDPADMVQETLAPRAARSKKSYVEDPQLDKNNNNRKRRAVEAQEKPRRR
SSRTVETAVSLPLVDGAVAQVREWSFGNIPKKDASRFVRAVKKFGNATQIDLIVDDVGGV
LAKAPHEAQIELFDLLIDGCQEAVKENTDIKGTVLDFFGVAVKPYELLARVEELQFLAKR
IARYKDPIKQYRIQLPYKKPQWSASCGWTETDDARLMVGIHWYGYGNWEKIRLDPKLGLA
TKIAPATLGERETFLPRAPNLDNRASALLQKEYAKFSGKSSKAKGGTRQTVNNDGSSGTR
SMRGRQKDAQEKDDNKSNKDDIQKRKIVEAEAREEGEISESEAETKYRLDKEEKWLEWCS
EVLDEEQETLKRLDRLQNTSVNLPKEKVLSRIRKYLQIIGDKIGEVVRQHSESYRQSRKS
SRSSRMTMRLWNYVATFSNMSGEQLHDLYLKLSQDLEGGVGPSHGGNFASIPPSKGGNSN
QLHPSRNQRPTRSLQYTSESFHNSENSGSSEAWKRRRRADPDNQFDTQPLYQPSPMMTNG
NRLQESSSSAGILGWGPVEMRRYGNERPKRGVHPSHFPAGHGPLL
NT seq
5178 nt
NT seq
+upstream
nt +downstream
nt
atggcattcttcagcaactccggaagcagggctgattcgggagggtacaacttgaatgag
aaggctgatgatgaaggcgcctacgagtcagtcagggatgggggtgttgactcgaactct
aggcagtggaacttaaatgagaaagcagaggatgcctaccacagtgaaccagagcaattt
gaagctggccaatcaagtctgtactcttctgagaacacattcggtcagcatgcccggaga
gggggcggtccatggggtacaaactttctgaaggattccaggtccaatcagacagccaaa
gaagttccgtcgaataggggaatggatgctgctagctcgcttgatgacatggatggtagt
ggagaggatgatgagctgaacagagcaaatggggatgtgcctgctgaggaaatgctctct
gatgactattacgagcaggatggagaggagcagattgaatcgttgcatcgtggtgggacg
aagcagtcaagctgctccacttctggtgcagcaacaaagtctgcttcgcgacaaaagaag
acgaagacaaagtacaatgcttatgctgacgatgatgacgatgagtataatgatgagaat
gacgacgacgatgatgcggatgaagatgatcctgatgacgtggattttgagccagacagt
gaaacggacaaggctgttgataaggataagtttatggatagtgagaattctgatggtgac
gatgatgatgagcttgagctgtcagatgatgaggatgatgattttgctgagaaccggagg
caacctaaacggctcaaggttgtagcaactaaaactcccaagggaagaaagttgcccatg
caggctcaacgaagacgtgggatgtctcacactgatgacgaatattcctcaggaaaagag
tcagatgttcccagcgatgctgatttcaatcacagatcaaaaaaacctgacagattgcat
cagaaacctgtgggccgcaatgatgttgccccgatcaattctcataatgagcttcgaact
tctggaaggaggacagtgaagaagatctcatacgctgaaagtgaagaaagtgatgatagt
gagaagtcaactaaacaacaaaagctcaaggaggaaccggaagaggaagacggagaaaca
atcgaaagagttctttggcatcaacccaagggtgtcgcggaagaggcaatgaggaacgac
caatcggctcaacctactgttgtcagcctaccatcagactttaatcaacagtgggatgaa
ctagagttctacataaaatggaaagggcagtcttacctgcattgtcaatggaagacatta
tcagagctccaaagtgttagtggatttaagaaggtattaaattacacaaaaagagttgct
gaggaacagaggtacaagagggcactatcacgtgaggaggttgaggtgcatgatgtgggc
aaggagatggagctggatcttattaagcaatacagtcaggttgaacggatatttgctgat
agggtcagtaaagctgatggagatgatctggttccggaatatttagtcaaatggcaagga
cttccatatgcagaatctacctgggaaaaagatactgatattgaatttgctcaagatgca
attgatgaatataaggcccgtgaagctgccacagctatacttgggaaaactgttgatttc
caaaggaagaaaagcaaagctagtttgaggaggcttgatgaccaaccagaatggctaaaa
ggtggtaaacttcgtgattatcagcttgaagggctaaactttctcgtcaatgggtggaga
aacgacactaatgttatacttgctgatgaaatgggtctgggaaaaactatccaatccgtt
tccatgcttggcttccttcataatgctcaagagatcaatggaccgtttcttgtagttgtg
ccactgtcaacattgtcgaattgggcaaaggaatttcggaagtggctgcctaacatgaac
gtcgtgatttatgttggaaaccgtgccagcagagagatgtgccagcagtatgaatttttt
tcagacaagaagggtggacgacatgtaaaattccacacgttgataactacatatgaggtg
attcttaaggacaaagctgttctttccaagatcaaatggaactatcttatggttgatgaa
gcccaccggttgaaaaattgtgaagcatcactgtatacgacccttttggaattcagcact
aagaataagctgcttatcacgggaacacctttgcagaacagtgtcgaagagctttgggca
ttacttcatttccttgatccagtcaaattcaacagcaaggatagttttgttgagaaatac
aaaaatttgagttccttcaatgaaactgagctggcgaatctgcacaaggaattgaggcct
cacattctaagacgagttataaaagatgttgagaagtctttacctcctaaaattgagagg
attctacgtgtcgagatgtcaccccttcagaaacagtactacaagtggattttggagcgg
aattttcagaatctgaataaaggagtccggggcaatcaggtctcacttttgaacattgtt
gttgaattgaagaaatgctgcaaccatccattcttgttcgaaagtgctgatcatggttat
ggtggagatagcattggcgatcgaaataaagttgaacgcattgtgatgagtagcgggaaa
cttgttttgttggacaaattattggtgagactgcgggagactaaccatcgtgtgcttata
ttctcacagatggttaagatgttggacatccttgcggaatacctctctctccggggattc
cagtttcagaggcttgatggtagtacaagagcagaccttcgtcaccaagccatggaacat
ttcaatgctcctggaagtgatgacttctgttttcttttatccacacgtgccggaggactt
ggtattaatcttgcaactgcagatacagtgataatttttgattcagattggaatcctcaa
aatgatttgcaggcaatgagtagggcacataggattggccaacaagagactgttaacatc
taccgtttcgttacgtgcaaaagcgtggaagaggatatattggaacgcgcaaagaaaaag
atggttctcgatcacttggttattcagaaactaaatgctgaaggcaggcttgagaagaaa
gaatccaaaaagggtggctccatgttcgacaagaatgaactttcagctatattgaggttt
ggggcagaggagttgttcaaagaagacaagactgatgaagagaccaagaggaaccttgaa
agtttggacattgatgaaattcttgagagagctgagaaagtcgaaacaaagggtggtgaa
ggggaggaaggaaatgagcttcttagcgctttcaaggttgctaacttttccagtggcgaa
gatgatgccacattctggagtagactaatacagccagatcctgcagatatggttcaggaa
actttggcaccgcgtgctgcacgaagtaaaaagagctatgttgaagatcctcaactcgac
aaaaataataataacaggaaaaggcgggcagttgaggcacaagaaaagcctaggaggcgt
tctagcagaacagtggaaacagctgtttcgttaccattggttgatggagccgtagctcaa
gtgcgagagtggtcttttggcaatattccaaagaaggacgcttcccgttttgtacgagcg
gtaaaaaaatttgggaatgcaacccagattgacttaattgtggatgatgttggtggtgta
ttagcgaaggcaccacatgaagcacaaatagagctgtttgatttgctgattgatggttgt
caggaggcagttaaagagaatacagatatcaagggcacagttttggattttttcggtgta
gctgtgaagccctacgaattgctggctcgtgttgaagagcttcagttcttggcaaagcga
attgcacgttacaaagatccaatcaagcaatatcggatccagttaccatacaaaaagcct
cagtggtcagcaagctgtggatggactgaaactgatgatgctagattgatggttggaatt
cattggtatggctacggtaattgggagaaaatacggttggatccaaagcttggcctggca
acaaaaattgcaccagcaacacttggtgaaagagagacatttttaccacgcgctccaaac
ttggataatcgtgctagtgccctcctgcaaaaggaatatgccaagtttagtggtaagagc
tcaaaagccaaaggaggtacccgccagacagtcaataatgacggcagtagtggaactcga
tcaatgagaggccggcaaaaggatgcacaagaaaaggacgataataagtcgaacaaagat
gacatccagaagcgcaagatagtggaagctgaagcaagagaagaaggtgaaatttctgaa
tcagaggcggagacaaagtatcgtctggacaaggaggaaaagtggcttgaatggtgctct
gaagttttagatgaggagcaggaaactttgaagcgcctggataggctacagaatacaagc
gtaaacctcccaaaggaaaaggttctttcgagaattcgcaagtacctccagataattggg
gacaaaattggggaggttgtccggcaacacagcgagtcttacaggcaatcccgtaagtct
agtcgctcctcccgcatgaccatgaggttatggaattatgttgcaaccttttcaaatatg
tcaggggaacagttgcatgatctctatttgaaacttagtcaagacctggaaggtggagtt
ggcccatcccatggtggtaatttcgcatcaattcctcccagtaagggaggtaactcaaat
cagcttcatccttcgagaaaccaaaggccaactaggtctctccagtacacttctgagtct
ttccataacagtgagaactctggaagttctgaagcctggaagcgtcggcggagagctgat
ccagataaccaatttgacactcagcctttgtaccaaccttccccaatgatgacaaatgga
aataggttgcaggaatctagcagttctgctggtattcttggctggggtccagttgaaatg
agacggtatggtaatgaaaggccaaaacggggtgttcatcctagtcatttccctgctggg
catggccctttgctgtag
DBGET
integrated database retrieval system
