Panicum hallii (Hall's panicgrass): 112880833
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Entry
112880833 CDS
T07366
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03030
DNA replication
phai03420
Nucleotide excision repair
phai03430
Mismatch repair
phai03440
Homologous recombination
phai03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112880833
03420 Nucleotide excision repair
112880833
03430 Mismatch repair
112880833
03440 Homologous recombination
112880833
03460 Fanconi anemia pathway
112880833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phai03000
]
112880833
03032 DNA replication proteins [BR:
phai03032
]
112880833
03400 DNA repair and recombination proteins [BR:
phai03400
]
112880833
Transcription factors [BR:
phai03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112880833
DNA replication proteins [BR:
phai03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
112880833
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
112880833
MMR (mismatch excision repair)
112880833
DSBR (double strand breaks repair)
HR (homologous recombination)
112880833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
DUF223
CDC24_OB3
TMEM219
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
112880833
NCBI-ProteinID:
XP_025801365
LinkDB
All DBs
Position
1:complement(57131321..57134729)
Genome browser
AA seq
653 aa
AA seq
DB search
MAAARLTPNAVTATLAGDTNLKPVVQVVDLRSIAVTGPPGAGPRFRAIISDGVATTQALF
AAQLCDLARSGLVRRGAIVQLLEYIVNDVRGRRAMVILNMEVLVPECEIIGNPVLPPESG
VSNSNSMRADQFNGTLGSTAGSTLSTVTRSNDNAPVIQRPMAGNSSNMIPRPSDNAQVFQ
PTVQPSYRPAPNYRNHGTIMKNDAPARIIPISALNPYQGRWAIKARVTVKGGIRRYHNAK
GDGKVFSFDLLDSDGGEIRATCFNALVDRFYEAVEVGKVYVVSRGSLKPAKKDYNHLNNE
WEIFLESQSTIELCPDENSSIPAMRFSFTSIDKIEDSENNAIVDVIGVVTSVNPSTTIQR
KNGMETQKRTITLKDMSCRSVEVTMWGDFCNREGLQLQEMVECGAFPVLAVKAGRVNDYS
GKSVGTISSTQLLINPDLAEAHSLRQWFDCGGKDASTQSISRDFTPAASRNEIRKTVAQI
KDDGLGMGDKPDWVTVKATVVFFKTDSFCYTACPNMIGDRQCGKKVTKSDSGNWLCDKCN
QEFPECDYRYLLQLQIQDHSGTAWATAFQEPGEELLGCSARELYTFKENEDPRYADVLLQ
GLYRQYLLRLKVKEETYGDERRVKNTVFKVERIDPSAESKFLLDDISRLTGSY
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgaggctgacccccaacgccgtgacggcgacgctggcgggggacaccaac
ctcaagccggtggtgcaggtcgtcgacctccggagcatcgcggtcaccggccccccgggc
gccgggcccaggttccgcgccatcatctccgacggcgtcgccacgacgcaggcgctgttc
gccgcgcagctctgcgacctcgcgcgctctggcctcgtccgccgcggcgcgatcgtgcag
ctcctcgagtacattgtcaacgacgtccgtggaaggagggctatggtcattcttaacatg
gaagttcttgttccagagtgtgagattattggaaatccagtactgcctcctgaatctgga
gtttctaattcaaattccatgagagcagaccagtttaatggcacacttggttcaacagca
ggaagtactttgagcacagtaacaaggtccaatgacaatgctccagtaatccagcgaccg
atggcagggaactcttcgaacatgatccctaggccaagtgacaatgcacaggtcttccaa
ccaacagtacagccatcctatcgccctgcacccaattacagaaaccacggcacaatcatg
aaaaatgatgctcccgctagaataatccccatatctgcactaaatccttatcagggccgc
tgggctatcaaggctcgagttactgtcaagggagggatccgccggtaccataatgcaaaa
ggtgacggtaaagtgttctcttttgacctgcttgattctgatggtggtgagatacgggct
acatgtttcaatgctcttgttgatcgtttctatgaagctgtggaagttggtaaggtctat
gtggtatcaagaggaagcttgaaacctgcaaaaaaggactacaaccatctgaataatgag
tgggaaattttcttggaatctcagtcaaccattgagctttgtcctgatgagaacagctcc
attcctgccatgcggtttagcttcacatcgattgataaaattgaagattcagagaacaat
gctattgttgatgtcattggtgtcgttacatctgtcaaccctagtaccacaatacagagg
aaaaatggcatggaaactcagaaaaggaccattaccctgaaggatatgtcttgtcgaagt
gttgaggttaccatgtggggtgacttctgcaacagagaaggcttgcagctgcaagaaatg
gtcgaatgtggggcctttcctgtgctggctgtcaaggctggaagagtgaatgattacagt
ggcaagtctgttggcacaatttcttcaactcaactcctcataaaccctgatcttgctgaa
gctcatagccttaggcagtggtttgattgtggaggaaaagatgcttctactcagtccata
tccagggatttcactccagcagcatcaaggaatgagatccgaaagacagtagcacagata
aaggatgatggtcttggaatgggggacaaacctgattgggtcacggtgaaggctactgtt
gtattcttcaagaccgactccttctgctacacagcttgccccaacatgatcggagacagg
caatgcggtaagaaggtgacaaagtctgactcaggcaactggctctgtgacaagtgcaac
caagagtttccagagtgtgattacaggtatctcctgcagttacagatccaagatcactcg
ggaacagcttgggcaacagcattccaagagcctggggaggagctacttggttgctcggcg
cgagaactctatacgtttaaagagaatgaggatcctcgctatgcagatgttttgctccaa
ggcttgtaccggcagtatctgctgaggctgaaagtgaaagaagaaacatacggagacgag
agacgcgtgaagaacaccgtgttcaaggtggagaggattgatccttcggctgagagtaaa
tttctgcttgatgacatttcaaggttgacaggatcatattga
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