Panicum hallii (Hall's panicgrass): 112880881
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Entry
112880881 CDS
T07366
Name
(RefSeq) uncharacterized protein LOC112880881
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112880881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112880881
03019 Messenger RNA biogenesis [BR:
phai03019
]
112880881
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112880881
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112880881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDR1_CTR1_ARMC3_pept
PK_Tyr_Ser-Thr
Pkinase
zf_PCFS4
CID
ABC1
Haspin_kinase
zf-C2H2
Pcf11_C
zf-H2C2_2
Motif
Other DBs
NCBI-GeneID:
112880881
NCBI-ProteinID:
XP_025801398
LinkDB
All DBs
Position
2:complement(11452919..11469405)
Genome browser
AA seq
1965 aa
AA seq
DB search
MELPPGAARRTTYSLLSQFPDDAAAGGPGPAPANVLQRQSSGSSYGAGSSVSASSDYPFH
LPPPASAAAGPGSAAAAPGGSSPCKSWAQQAEETYQLQLALALRLCADAACAADPGFLDP
GDPGSGGRGSGNGRAFPLAQPAPSAESLSHRFWVNGSLSYNSTIPDGFYVIHGLDPFVWS
LCTDVHEENRIPTMESLKSVRPDDSSIQAILIDRRTDFDLGMLESYASSLLSSCTDAKDV
VIQLAKVVSSRMGGTASNEENLFPRWKECNEAIKSSTGSVALHLGKLPVGLCKHRSLLFK
MLADKVSIPCRVVKGCKYCKSDDASSCLVRFGLEREYLVDLIGDPGQLSDPDSFVNGPYS
LSVSSPLHPPKFRSLEITSNFSLVAKQYFADCHSLNLLFSDSSTGATSAVTTLDQPYSKK
HVAGDETMNNWMPGKGQAAMKPDIIVPEAPREVLPLISSNMKLDKKKELKLIEETQQLRH
TVSDLSLAADDLIIPWNELVLKEKIGAGSFGTVHRADWHGSDVAVKILMEQDFHPERFRE
FMREVAIMKSLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLYKLLHRSGAKEVLDERRRL
NMAFDVAKGMNYLHRRSPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSLA
GTPEWMAPEVLRDEPSNEKSDVYSFGVILWELMTLQQPWCNLNPAQVVAAVGFKGRRLEI
PKDLNPLVAALIESCWANEPWRRPSFTNIMEALRPLIKVPVPQLSRSDSYAAIFNISVTN
PTNGKGLSDKMAAAARVATCAASSSSSLRGSRCSLSTSLPLPSSIRNADAKSNQTCCCVH
CPSHLPSSSSSSLAPPIHSSRFPNPSGGAATEPCSAGSASIASAASQTLAPFPPCAPNPS
FPAMRASASAAPMEASASARRSAPGPDPGAKKPRLGQPPPRDPRSSSYATASNGAAASAA
EQALVDELLGQYRTALGELTFNSKPIITNLTIIAGENLQAAKPIAALICANILEVPSEQK
LPSLYLLDSIVKNIGKDYVKHFSARLPEVFCKAYKQVDPSIHHSMRHLFGTWKGVFPPLP
LQTIEKELGFQTSANGSSSAAPSRPDSQSPRPSNSIHVNPKYLEARQQLNQPTKGILGSG
AKTAVIADAGDDVERPNRLGTDRSAGRRLDAPNARPNIQRTQRDPFSNPVNEKQAGRDVR
GLGFSNISQQAVVGTGQVRSKPKGQDGIVGPYYATGVGSSEEQFDRRSNFYSSKDVRPSG
SVRLDSALLPTPSINSDRVGRSSSNKSWKHSEEEEYVWDDVHSQAADYSGNNTVRKGEWM
ADDGNAKFASLQRAKWPEVGAVEHLDPNIHKLDSLPRFGLATGQDRRLAAYLDHEEYIHG
KHEVEPRIDREIMPDGQQFPPPRSSSLWVSHEKTHPDIGLDPRISRFSNQPGERSTIYTG
TMSASITSSVPVGLSGPYAGRSSLDSANSVPTRSTETFGQQKHRYWSSSPPPAHSPSSTA
PFARQSSPNPAEPDFYPSRPFSQLGQSPQEEYSQRAAALAKDSHFIAQNVGLTQGQPSLQ
ATQQAQKYPTLQSKLHSKPTDEVQASFSRENSPSLFRPSIQLGEVSLPTDLTPISSDLTS
ASNLLAGLIKSGFKPNNPSDFASLGAQPLVPSGPLPHTLPSPPVASSSLQNAAGENTTLQ
TQTTNTARPPLPPGLPPPASTQSAEKAAPLSSLLSSLVAKGLISTPATESSTAVPSQPNK
SSVNATNVTAAAMPLPAQMPSVGKEASNSASSTPTNVLLPKGVEIKTGDLIGLEFKPEKL
RKYNEHVISSLFGDRNYQCKLCGERFSLEDELRSHTTCRGSRESETIYAGMAPKKWYPSK
NSYIDGSHEMEDSAEAFDVDLSSGEEVCEFMVPADESQIICALCGEPFDDFYSIEKGDWM
YKDTVFLDSPNGEGSCGSNVESKEQVPIVHVRCMPRGSNDGMEVD
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atggagctgccccccggcgccgcccgccgcacgacctactccctcctctcccagttcccc
gacgacgccgcggccggcgggccggggccggcccccgccaacgtcctgcagcgccagtcc
agcggcagcagctacggcgcggggagctccgtctccgcctccagcgactaccccttccac
ctcccgccgcccgcctcggccgccgcggggcccggatcggcggcggcggcgcccgggggg
tcgtcgccctgcaagagctgggcgcagcaggccgaggagacctaccagctgcagctcgcg
ctcgcgctccgcctctgcgccgacgccgcctgcgccgccgaccccgggttcctcgacccc
ggcgaccccgggagcggcgggaggggcagcgggaacgggagggccttcccgctcgcgcag
cccgcgccctccgccgagtccctctcccatcgcttctgggtgaatggctcgctatcatac
aacagcacaataccagatggattttatgtgattcatgggttagaccccttcgtgtggtca
ctatgcacggatgtgcatgaagagaaccgcatacccaccatggaatcactcaaatctgtc
cgtcctgacgattcttcaattcaagccattctcatcgatcggagaactgattttgatttg
ggtatgctggagagttatgcttccagccttttgtccagttgtactgatgccaaggatgtg
gtaatccaacttgccaaagttgtatcttcaaggatggggggtacagcgtccaatgaagag
aacttgtttccacgatggaaagagtgcaacgaggccatcaagtcaagtacaggatctgtt
gcgcttcatctgggaaagcttcctgtcggtctttgcaagcaccgctcattgttattcaaa
atgttagcagataaagtcagtattccatgtagagttgtcaagggttgtaaatattgtaaa
tctgatgatgcctcctcctgtcttgtacgctttgggcttgaaagggaatacttggttgat
ttaattggggatcccggccaacttagtgatcctgattcctttgtcaatggtccctactca
ctatcggtgtcctcacctcttcatcctcccaaatttaggtcattggagatcacttcaaat
ttcagcttggtagccaagcagtacttcgcagattgccattcactgaatctcttgttcagt
gattcttccacaggtgctactagtgcagtaactactctggaccaaccttattccaagaaa
catgttgctggggatgagaccatgaacaactggatgccaggaaaagggcaagcagcaatg
aagccggacatcattgtgccagaagctcctcgtgaggttttgccactaatttcctccaat
atgaagcttgataagaagaaagaattgaagttaattgaggagactcagcagttaagacat
acagtcagtgatctgtcacttgctgcggatgatctgatcattccatggaacgagctggtt
ttaaaggagaagattggagcaggttcttttggaacagtccatcgtgctgattggcatgga
tcggatgttgcagtcaaaatacttatggagcaggattttcatccggagcgcttcagggaa
tttatgagggaggttgcaattatgaaaagtctgagacatccaaatattgttttattcatg
ggtgctgtcactgaaccgccgaacctatcgatagttacagaatacttgtctaggggtagt
ttgtataaacttttgcatcggagtggtgcgaaggaagttctggatgagagacgccgatta
aacatggcatttgacgtggccaaaggaatgaactacctgcatagacgcagccctcctatt
gttcatcgtgacctgaagtctccaaatcttctagttgacaagaaatatactgtcaaagta
tgtgactttggcctttcaagattgaaagctaacaccttcctgtcttccaagtctttggct
ggaactcctgaatggatggcacctgaagtgcttcgagatgaaccatccaatgaaaaatct
gatgtctacagtttcggtgtcatcctatgggaattaatgacattgcaacagccatggtgt
aacctaaatcctgcccaggtggttgctgctgtaggttttaaaggtagaaggcttgaaatc
cctaaagatctaaatcctctagtagccgctttaattgaatcttgctgggcgaacgagcca
tggcgaagaccctcatttacaaatattatggaagctttgagaccattaattaaggttcca
gtgccgcagttgagtcgttcagattcgtatgctgccattttcaacatttcagtcacaaat
cccacaaatggaaaggggctaagtgataaaatggcagcagctgcccgggttgcgacctgc
gctgcgtcctcttcctcctcgcttcgcggctcgcgttgctccctttccacctcgctccct
ctcccctcctcgatccgaaacgctgacgcgaaatcaaatcaaacctgctgctgcgtccac
tgtccgagccacctcccttcctcgtcctcctcctcgcttgctcccccaatccattcctcc
cgattcccaaaccccagcggcggcgcggccaccgaaccctgttccgcgggttcggcttcg
attgcctcagccgcctcgcaaaccctagctcccttccccccatgcgccccaaaccctagc
ttccctgccatgcgcgcctccgcttccgcggcccccatggaggcctccgcctccgcccgc
agatccgcgccgggccccgaccccggcgccaagaagccgcgcctcgggcagccgccgccg
cgggaccccagatcttcgtcctacgccaccgcctccaatggcgccgccgccagcgctgcc
gagcaggcgctggtcgacgagctgctcggccagtacaggaccgcgctcggtgagctaacc
ttcaactccaagcccatcatcaccaacctcaccatcatcgccggcgagaacctccaggcc
gccaagcccatcgccgccctcatctgcgccaacatactcgaggttccaagtgaacagaag
ctaccatctctatatctacttgacagtattgtcaagaatattggaaaagattatgttaaa
catttctctgcaagactgccagaggttttctgcaaggcgtataaacaagttgatccttct
atacatcatagcatgaggcacctttttggaacatggaaaggagtgtttcctccacttccg
ctccaaacgattgagaaggaacttggatttcagacatctgccaatggatcgtcaagtgcc
gcaccatcaaggcctgattctcagtccccgcggccatccaatagcatacatgttaatcca
aaatatttggaagcaagacagcagctcaaccaaccaactaaggggatactaggaagtggt
gctaagacagctgtaattgccgatgcaggcgatgatgttgagaggcctaacaggctaggt
actgacagaagtgcagggcgacgattagatgctcctaacgctaggcctaacattcagcgc
actcagagggacccttttagcaatccagtaaatgaaaaacaggcaggtagagatgtcagg
ggccttggattctctaacatttcgcagcaagctgttgttgggactggtcaagttcgctca
aaacccaaaggtcaagatggaattgtagggccgtattatgccactggtgttggctcttct
gaagaacaatttgaccggcgcagcaacttttattcaagcaaggatgttcggccgtcagga
tctgtacgtttggatagtgcacttcttccaactccttccattaattctgatagagttggt
agatcttcatcaaacaaaagttggaagcactccgaggaagaagagtatgtgtgggatgac
gtacattctcaagcagcagattatagcggtaacaatactgtaagaaaaggagaatggatg
gccgatgatggcaatgctaagtttgcaagcctccaaagggctaaatggcctgaggtggga
gctgttgaacatttggacccaaatatacataaactagatagcttaccaagatttggactt
gccacaggtcaagatagaagacttgcagcatacttggatcatgaagagtacattcatggt
aagcatgaggtggaaccaagaattgatagggaaattatgcctgatggacaacagttccca
ccacctcgaagttcctctctctgggtgtcccacgaaaaaacacacccagacattgggctg
gatcctaggatatcaaggttttccaatcagccaggagagaggtctactatttatactggt
accatgtcagcaagtatcacttcatctgtacctgttgggttatcaggaccctatgctgga
agatcaagcctagatagtgcaaacagtgtgccaacacgatcaactgagacctttgggcag
cagaagcacagatattggtcatcttcccctccaccagctcactcaccttcatctactgca
ccctttgcacgtcagagttctccaaatcctgctgagcctgatttttatccttccagacca
ttttctcaattgggccaaagtcctcaagaagaatatagccaaagagcggcagcacttgct
aaagattctcattttattgctcaaaatgttggacttactcagggacaacctagtctacag
gcaactcagcaggcacaaaaatatcctaccttacagtcaaagctacatagcaagccaact
gatgaagtgcaggcaagcttttcgcgtgaaaattctccatcgctgttcagaccttccatc
cagcttggagaagtctctttgcccactgatttgacccctataagctcagatttgacaagt
gctagtaatttgttggctggtctcattaagagtgggttcaaaccaaataaccccagcgat
tttgcaagtttgggggcacagcctcttgttccaagtgggccacttccacatactctgcca
tctccaccagtggcttcttcatcactgcaaaatgcagctggtgaaaataccactctgcaa
actcagacaacaaacactgctcgtccacctttgccaccaggtctgccaccacctgcatca
acacagagtgcggagaaagctgcacctctctcaagtctgctcagttccctggttgcaaag
ggattaatctctacgccagccactgaatcatccaccgctgtcccttcacagccaaataaa
tcaagtgtgaacgctacaaatgtcacagctgcagctatgcctttgccagctcagatgcct
tcagttggtaaggaggcatctaattcggcttcatctaccccaacaaatgttttgttaccc
aaaggtgtcgaaatcaagacaggtgaccttattggcctggagttcaagccagagaaactt
cgtaagtacaatgaacatgtgattagcagcctctttggtgaccgaaactatcagtgtaaa
ctctgtggtgaaaggttcagtcttgaagacgaattgaggtcacacacgacatgccgtggg
tcaagggagtctgagactatctatgctggtatggcacctaaaaaatggtaccctagcaag
aacagttacattgatggatcacatgaaatggaggacagcgctgaggcatttgatgtggat
ttaagttctggagaagaagtgtgcgagtttatggtccctgcagatgagagccaaatcatc
tgtgcactatgtggggagccatttgatgacttctattctattgagaagggggactggatg
tacaaggacacggtgtttctggattcccccaatggagaaggcagctgcggaagcaatgtt
gagagcaaagagcaggtgcccatagttcatgtaagatgtatgccaaggggctcaaatgac
ggcatggaggtggactag
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