Panicum hallii (Hall's panicgrass): 112881497
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Entry
112881497 CDS
T07366
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112881497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phai03400
]
112881497
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
112881497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
112881497
NCBI-ProteinID:
XP_025801993
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All DBs
Position
2:57624001..57630426
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AA seq
1242 aa
AA seq
DB search
MIKGSTGHHNHPISAVPFEALHNGSWHGVNSIRIRNGGLFVKFVCCGSSVEHNIDGDNLR
LHSRKATCLDCSHVLRPGADVCVKQASSRGETKSSVPLYRDARLIKITKKHYADQCLCLF
AVIFYKDQCPGSKGKVIAGTIAEVVTIGDVFILQKLQYGELQDRSVQWSSAEDCLHHNRS
KLLSARFSTEVTHLIVLSILRGMEFNIKVVEGKIIYQITKRDEVQYSVDSMSIPPGFGKN
MDIISYKPRDEALRPRIRTVPVIQVNKQNLAEYGCTTEMNELDSAQDVEVLYERVDLRRS
KRMKTQPDRFTSYDAPNFNRTYKKKEDNASSTMNENSESDLDWDSPVQEESGNEEVLGNS
GVKQTAFSPFMVKEDPRSMDGQRKNPMKRTQCSSPVKEKPTSVEIEKNTTEQRCSDSHVP
HTPAKNKEKYSRPPLSFRLKPFTSSHSLGGNSEPAFCQKRGRKRKRHMREREYKEMIDQC
IGNIQCEIERDSDFKLDVQIMNCSGNAYRKEDFTWSSSTDSQEEKDEFEELWKEMDYALA
SLELLEQNQCYTITNLDFQMPDSEATHESDTDLGKRGEHCHHDCILDEQLGLTCRLCNVV
CTEAKDIFPPMFTGKDHERPGRSEFCQHDHVLDPSFLEICAPQFSKFKGSGNVWASITDL
EPKLHAHQRKAFEFIWKNVAGSLHLEEMDDPTESRGGCVVAHTPGAGKTLLLISFLVSYL
KVHPRSRPLVLTPKAAIHTWKREFEKWGTSLPLHVLHYSNERGKAMGTLSSKMRAIFKNF
RRPSWKMMRMMDSLDKLCKWHEDPSILLMTYPSFLALTKEDSKLQHRAFMAKVLMNNPGL
LILDEGHNPRSNKSKLRKLLMKVKTEFRILLSGTVFQNNFGEYFNTLTLARPRFVNDVMT
ALVAEADREAQKRTGHQEALARRIFVEKVGQKIESSSVDDRVDGISVLNKLTRGFIDSFE
GTEQNNLPGIHVYTLFMKPTDIQEEVLAKVTMPVPGNARYPLEVELLITIASIHPWLIKT
TKCASTYFTLEEVARVEKYKRTYAVGCKSKFVIDLLHKSSFRGERVLIFCHNVSPINFLI
KLIEIVFGWRLGEEVLVLQGDQELPMRSDVMDKFNSDRKGKRKVLLASTTACAEGISLTG
ASRLVMLDSEWNHSKTMQAMARAFRPGQERMVYVYLLVASGTWEEDKYNSNRRKAWIAKM
VFFGRYVDYPLQKHVTEIDDEVLKELADEDETKAFHRIVKQD
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagggatccacaggccaccataaccaccccatcagtgcagttccattcgaggcc
cttcataacggatcatggcatggagttaattctataaggatacggaatggcggtctcttt
gtgaaatttgtctgctgtggatcctctgtcgagcataatattgatggggacaatctgcgg
ttacattccagaaaagcaacttgcttagattgctcgcatgttctcaggccaggtgctgat
gtctgtgtaaagcaagcaagttccagaggagaaacaaagtcttctgtaccattgtatcgt
gatgcaagactcatcaaaatcacgaaaaaacattacgcagaccagtgcctctgcttgttt
gctgttattttctacaaagaccagtgccctggcagcaaaggaaaagtgatagctggtaca
atagccgaggtggtgacaataggtgatgttttcatcttgcaaaagctccaatatggggag
ctccaggatcgcagcgtgcaatggagttctgcagaggattgcctccatcataatagaagc
aagctgttaagtgcaagattctccacagaagttacacacctgatagttttgtctatcctg
aggggaatggaattcaacatcaaggtggtagaaggcaagatcatttatcaaattaccaaa
agagatgaagtgcagtatagtgttgattccatgagcatacctccaggttttggcaagaac
atggatataatatcatacaagccacgtgatgaggctttacgcccaaggatcagaacggtt
ccagtcattcaggttaataaacaaaaccttgcagaatacgggtgtaccactgagatgaat
gaattggatagtgcacaagatgttgaagtcttatatgagcgtgtggacttgagacgctca
aagcgtatgaaaactcagccagaccgctttactagttatgatgcacctaatttcaatcga
acctacaagaagaaagaggacaatgcatcatctaccatgaatgaaaattcagagagtgat
ttggattgggattcaccggttcaggaagaatcaggtaatgaagaggtgctaggaaattct
ggggtgaagcaaacagctttcagccctttcatggtcaaggaagacccaaggtccatggat
ggccagcgcaagaacccaatgaaaagaactcagtgctcttctcctgtaaaggaaaaacca
acctctgtggaaatagaaaagaacacaacagagcaaagatgctcagattctcacgttcca
catacacctgcaaagaacaaggagaagtacagtcgtccacctttatcatttcgactgaag
ccctttacttcatctcacagcctaggtggcaatagtgaaccagcattctgccaaaagagg
ggtaggaaaagaaagagacacatgcgtgaaagagaatacaaggaaatgatagaccaatgc
attggaaatatccagtgtgaaattgagagagattctgactttaagctagatgtccagata
atgaattgtagtggaaatgcttaccgaaaagaggattttacatggtcgtcttccactgat
agtcaagaggagaaggatgagtttgaagaactgtggaaagaaatggactatgcattggcc
tcactagaacttcttgagcaaaaccagtgttatacaataacaaatttggacttccagatg
ccagattcagaagccactcatgagagcgatactgatttaggaaaaagaggagaacactgt
catcatgactgcatactggatgaacagcttggtctaacctgcagattgtgcaacgtcgtg
tgcactgaggcaaaggatatctttccaccaatgttcactggtaaggaccatgagaggcct
ggacggagtgaattttgtcaacatgatcatgtgcttgacccttcttttcttgagatctgt
gcaccacaattctccaaatttaagggatctgggaatgtgtgggcttcgatcactgatctt
gaaccaaagctgcatgctcatcaaagaaaagcatttgaattcatatggaaaaacgtggca
ggatcattacaccttgaagaaatggatgatccgacagagagtagaggtggctgtgtggtt
gcacatactccaggagcgggtaaaacactgttgctgatttcatttcttgtcagttacttg
aaagttcacccaagaagccgaccattggtccttactccaaaagctgcaatccatacatgg
aagagagagtttgagaaatggggtacttcgcttcctttacatgtgctccactactctaac
gaaaggggcaaagcaatggggactcttagttcaaaaatgcgggcgatttttaagaacttc
cgccgaccatcctggaaaatgatgcggatgatggatagtctggacaaactgtgcaagtgg
catgaggatccaagcattctcctcatgacatatccttctttcttagcgcttacgaaagaa
gactcaaaactgcagcatagggcgttcatggcgaaagttcttatgaacaaccctgggcta
ctgatcctcgatgaagggcacaacccaagaagcaacaaatcaaagttgagaaagctactg
atgaaggtgaagactgaatttagaattctcttgtccggtacagtcttccagaataacttt
ggagaatatttcaacaccttaacattggccagacctcgttttgtcaatgatgttatgacg
gcgctagttgcagaagcggacagggaagcacagaaaaggactggtcatcaagaagcactt
gcgaggcgtatttttgtggaaaaagtgggacaaaagatcgagtctagtagcgtagatgac
agagtggatggcatctctgtgttaaacaagcttactcgtggattcattgattcatttgaa
gggacagaacagaacaatcttccagggattcatgtgtatacccttttcatgaaacccact
gacatccaggaagaggtgctggcaaaagtaacaatgcccgtaccaggcaatgcccgttac
ccactggaggttgagctgctcatcacaattgcttctattcatccttggcttataaaaaca
accaagtgtgctagcacttactttaccctagaagaagtagctagagttgagaagtacaag
aggacttacgctgttgggtgcaagtcaaagtttgtaattgatcttctgcacaagtcctca
ttcagaggggagagggtgctgatattttgtcacaacgtgtccccgataaactttctcatc
aagctgatagagattgtgtttgggtggcgtcttggggaggaagtcctggtgttgcaaggt
gatcaagagctccctatgcgctcggatgtcatggataaatttaacagcgacagaaaggga
aagaggaaggtgctgcttgcttcaacaacagcctgtgctgagggtatcagtctgaccggt
gcatcaagactagtgatgctggattcagagtggaaccattcaaagacaatgcaggcaatg
gcaagggcattccggcctggccaggagagaatggtatatgtctaccttcttgtggcatct
gggacatgggaggaagataaatacaacagcaacaggaggaaagcttggattgcaaagatg
gtcttctttgggcgttatgttgactatccattgcaaaaacatgtgactgaaatcgatgat
gaagttctgaaggagcttgctgatgaagatgagaccaaagctttccataggatagtgaag
caggactga
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integrated database retrieval system
