Panicum hallii (Hall's panicgrass): 112881667
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Entry
112881667 CDS
T07366
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112881667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phai03041
]
112881667
Spliceosome [BR:
phai03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
112881667
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
SabA_adhesion
Motif
Other DBs
NCBI-GeneID:
112881667
NCBI-ProteinID:
XP_025802243
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Position
2:27489895..27494275
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AA seq
860 aa
AA seq
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MDRDRSSRRARDDDGHHRSRDRDDNHHRRRSRHDTDDHHKHDGGDDDRRRRHREKDGGGD
DEDRRSHRHHRDKDDRRSHRHRDGGDDGDDRRRDSRRSVSSSDSPPPSAKRDRSLSRPRE
SIERRDSADREPLSSSRKRKGHEGGGGGDEADRDVGKRARASVDPPPPKEERPRRERRRF
EDVDANGKNGDVRSKVSKEISSHDQKKGEFAVNGDLQSGAVHNDGSQQPLNAAPAVVSSS
VPVSSKVSSITTNNENEGVSVRSDEVTGKSSTDGSATSAAGKNSNLSLDALAKAKKALQL
KKELSEKLKKLPMLNKLGTTGQVSKKEDAKTAVETQTVSKGEAKHTGPVSGLPTSSVSGT
PAAAGAIGIPGLTNIPNLDAVKRAQELAAKMGFRQDPQFAPLINMFPGTSTELTVPQRPP
KAPVLRLDAQGREIDEQGKVISMTKPTNLSTLKVNINKQKKEAFQIIKPDLDTLAKSSAH
FDERMGINQNKLLRPKRPGFQFVEEGKLSRQAELHRIKSQFGEAQAKELKVKQAQLAKAK
AEVDMNPNLIEVAFGMRAPKQKQKEAIPDIEPWDAKILLSATYEDFTVEKLNMDRITIYV
EHPEPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLLEPPKPKVKM
SNLMKVLGSEAVQDPTRLEMEIRTAAAEREQAHVDRNIARKLTPSERREKKERKLFDDPT
NTVETIVCVYKIRDLSHPQTRFKVDVNAQENRLTGAAVITDGISVVVVEGGKKSIKRYNK
LMLNRIDWAAAVSGEDDADEEPDKPVNSCALVWQGSVAKPAFHRFTVHNCRSEAAGKKVF
ADASVPHYWDLAVNFSEDSS
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcgaccgctcctcccgccgcgcccgcgacgacgacggccaccaccgctcccgc
gaccgggacgacaaccaccaccgtcgccgcagccgccacgacaccgacgaccaccacaag
cacgacggcggggacgacgaccgccgccgccgccaccgcgaaaaggacggcggtggcgac
gacgaggaccgccgcagccaccgccaccaccgcgacaaagacgaccgccgcagccaccgc
caccgcgacggcggggacgacggcgacgaccgccgccgcgatagccgccggtccgtgtcc
tcgtcggactccccgccgccctccgcgaagcgggaccgctcgttgagccgcccgcgggag
tcaatcgagcgccgcgactccgccgaccgcgagccgctgtcctcgtcacggaagcggaag
ggccacgagggcggtggcggtggggacgaggccgaccgagatgtcggcaagcgggctagg
gcctctgtggacccgcctccgcccaaggaggagaggcctaggcgtgagcgccggaggttt
gaggatgttgatgctaatgggaagaatggtgatgtgaggagtaaggtgagcaaggagatc
tcatctcatgaccagaagaagggggagtttgcagttaatggagatttacagagtggtgcc
gtgcataatgatggttctcagcaaccgctcaatgccgcacctgctgtagtgtcatcgtct
gttcccgtgtcttcaaaggtatcttcgattactaccaacaatgaaaatgagggggttagt
gttagatctgatgaggttactggaaaatctagtacagatggaagtgcaacctcagctgct
ggcaaaaatagtaatctatctcttgatgctttagccaaagcaaaaaaagctttgcaactg
aagaaggaactgtcagagaaactcaagaagttacccatgcttaataaacttggcactact
ggtcaagtttctaagaaagaagatgcaaaaacagctgtagaaacacagactgtttctaaa
ggagaagcaaagcatactggtccagtttctggtctgcccacgagtagtgtctctgggact
ccagccgcagctggtgcaattggtattccgggtcttacaaacattcccaatctggatgct
gtgaagcgagcacaagagcttgctgctaagatgggattccggcaagatccacagtttgct
cctctcatcaacatgtttcctggtacatccactgaacttactgtgcctcaaagacctccc
aaggctcctgttcttcgccttgatgctcagggtagggaaattgatgaacagggaaaggtt
atcagcatgacaaagccaacaaatttgagtactctaaaggtcaatataaacaagcaaaag
aaggaggcttttcaaatcataaagccagacttagacactcttgcaaaatcaagtgctcat
tttgatgaaaggatgggcataaaccaaaacaagctcctccgtcctaaaaggccaggattt
cagtttgttgaagagggcaaactctctaggcaagctgaattgcatcgaattaagagtcaa
tttggtgaagcacaagctaaagagctcaaagtaaagcaagcccagctcgctaaggcaaag
gcagaagtagatatgaacccaaaccttattgaagttgcttttggtatgagagctccaaag
caaaagcagaaggaagcaattcctgacattgagccatgggatgcaaaaattttactttct
gccacatatgaggatttcactgtggagaagcttaatatggacaggatcaccatatatgtg
gaacatccagagccaatagaaccaccggctgaacctgcaccaccgccgccacagccactg
aagttaactaaaaaagagcagaagaagctgagaacacagaggcgtcttgctaaggaaaaa
gataggcaagaaatgattaggcaaggcctattggagccacccaaaccaaaggtcaaaatg
agcaatcttatgaaagttctaggctctgaagctgtgcaagatcccacgcggctggagatg
gaaatcagaactgccgctgcagagcgtgaacaggctcatgtagaccgcaacattgctcgc
aagctcacaccatctgaacgccgcgagaagaaagagcggaagctttttgatgatcctact
aatacagtggagactatagtttgtgtttacaagatcagagacttgtcccatccacagaca
cgcttcaaagtcgatgtcaacgcacaagagaataggctaactggtgctgcagtcatcacc
gatggtatcagtgttgtggttgttgaaggagggaagaagtcaatcaaaaggtacaataag
ctcatgctcaaccggatagactgggcagccgcagttagtggtgaggatgatgctgacgag
gaacctgacaagccggtgaatagttgtgcattggtctggcagggcagcgtggcaaagcct
gccttccacaggttcactgtacacaactgccggagtgaggctgctggtaagaaggttttt
gctgatgcttctgttcctcactactgggaccttgctgtcaatttttctgaagattcatca
tga
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