Panicum hallii (Hall's panicgrass): 112882137
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Entry
112882137 CDS
T07366
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03440
Homologous recombination
phai03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112882137
03460 Fanconi anemia pathway
112882137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phai03400
]
112882137
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112882137
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
112882137
FA (Fanconi anemia) pathway
Downstream FA components
112882137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
Motif
Other DBs
NCBI-GeneID:
112882137
NCBI-ProteinID:
XP_025802910
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All DBs
Position
2:complement(49085814..49094728)
Genome browser
AA seq
1288 aa
AA seq
DB search
MGAAAMAGVDADADDFVSPSSSAPPAPRARADGGVYHVGGVPVEFPYKPYGTQLAFMGRV
IATLDRARRQGQSHALLESPTGTGKSLSLLCSALAWQRHYPLRSPPTAPATAPDPFLHGG
GFVADDTQPQATPVIPEKAAKKKNAPTIYYATRTHAQITQVVREYRKTSYRVRMAILASR
KHYCINKLACMSDNIDEQCKLLLDDNVQGSSCSEFKNAQKLSRHPSLQIGGCYEVHDIED
LVRVGQKVKGCPYFAAQHMAEAAQLVFCPYNYLISPIVRRAMDIDISGSIIILDEAHNIE
DTARDAGSVDVDEESLYLLQAELQNLATDEAAAMIYQPLHDVIQGLMGWISEREDNLQNH
EFGHPASYWTGEKAMKELERAGITPTHFSVLQECATKAVKAASDTESDGSHLSGGRAMTL
ESLFSSLSYFFANNGRNSCDYQLALQRFVKKEGKDEISSKCTMSLWCLNPAVVFREIADL
TLSVILTSGTLSPMGSFASELGVQFEACLEAPHVINVDSQVFAAVLSSGPTRRKLNASYK
TADNSSFQDELGTSLEEICRIVPGGALVFFPSYKLLDKLQVRWSQTGQWARLNAQKHVFV
EPKGSTEELEPVLKGYYDAILGKAPVKKGRGGAKQIVKNRLAKNSSQESAKAGAALLAVC
RGKVSEGIDFSDDNARVVVIVGIPFPNINDVQVKLKKRYNDSFKSSKCLLSGSEWYCHQA
FRALNQAAGRCIRHKSDYGGIILIDERYNEDRNLVYISKWLRNAIKKYDSFQDTIDGLQR
FFQNAEEKIKIKDRDMFPKIKLESEALSSLSDKRKLPWPELSLSNHSALQKNQKIKTECL
SQKVPNIDGVAADQKKVGMCYTSPEVSKISSRSSLLVKKEISPTPNSPRMAYQLPACKVQ
SDSEGVADTEANYEVKTEVINFEEDDFKPRYKMTILSPLEGRSPQSPPVEEISPVASPSN
YSEVNISVGINNRNLSCLSTSAATPERATYRDCHETFINRSVNSHCEKKRRLRSPMSCCT
YSDHSNSASKSHCRTDYAVNIVHADLNRNAELCCKNMSMSRCENVELERNYRAEEVSEKM
PMQKKLLISCIRCKTALGLEQDELLVTCSQSSSSKFYLAFLLRHGLSTIGFPEDGFQAST
PAEIELLECDASSLNQNFFGKFSSQGSCHSGVWSAKDGCVYKAVTCPFCFSENTCATILG
VQVLATDKPNQQLVEKVLLFSERLDVKPEPSKRQASKTWRNSSNSISPPPVMDLESFAYK
PLKKDPVPLNSRRSKLRLPSTNKPTTGT
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccgccgccatggccggcgtcgacgccgacgccgacgacttcgtctcgccgtcg
tcatcggcgcctcccgccccgcgagcgcgggccgacggaggcgtgtaccatgtgggcggc
gtgccggtggagttcccctacaagccctacgggacgcagctggcgttcatggggcgggtc
atcgccacgctcgaccgcgcgcggcggcaggggcagtcgcacgcgctcctcgagtctccc
accggcaccggcaagtccctctccctcctctgctccgcgctcgcctggcagcggcactac
ccgctccgctccccacccaccgcgcccgccactgcccccgacccgttcctccacggcgga
ggattcgtcgccgacgatacccagccgcaggcgacgccggtcatcccagagaaggcggcc
aagaaaaagaacgctccgaccatctattacgcgacgaggacgcacgcgcagataacccag
gttgtccgggagtaccgcaagacgtcgtaccgagtgcgcatggccatcttggcctcaagg
aagcattactgcataaataagcttgcttgcatgagtgacaacattgatgagcaatgcaag
ttgctgctagacgacaatgttcaaggttcctcatgctcagaattcaagaatgctcagaag
ctaagtcgacatccatcccttcagattggtggctgctatgaagttcatgatattgaggat
cttgtcagggttggccagaaagtgaagggatgtccatactttgctgcacaacacatggca
gaagcagcacagctggttttctgcccatataattacctgattagtccgattgtcaggagg
gcaatggacattgatatcagtggctcaatcattattcttgatgaggcacacaacatagaa
gatacagcacgtgatgctggaagtgttgatgtcgatgaagaatcactttacttattgcag
gcagaactacaaaacttggccactgatgaggctgctgcaatgatataccaacccctacat
gatgttattcagggtcttatgggttggatttctgagcgggaggacaatctgcagaatcat
gagtttggacatcccgcttcatattggactggtgaaaaggctatgaaagaactcgagcgg
gctggtattactccaacacacttctcggtattgcaagaatgtgcaacaaaggcagttaaa
gctgcttccgatactgaatcagatggatcacacttaagtggtggtcgtgctatgacacta
gagagtctattctcttcattgagttacttttttgctaataatgggcgtaattcatgtgat
tatcaacttgctttgcagcgttttgttaaaaaggaaggcaaggatgaaatttcttcaaaa
tgcacaatgagtttatggtgtctcaatcctgctgttgtctttcgagaaattgcggatcta
accctttcagtaattctgacatctggcacactttcaccaatgggttcatttgcatctgaa
cttggtgtccagtttgaggcttgcctggaagctcctcatgtaattaatgtcgattctcag
gtttttgcagctgttctatcatctggtccaacaagacggaaattgaatgctagctataaa
actgcagacaattcttctttccaggatgaacttggaacttcactagaagaaatatgcaga
attgtgcctggtggtgctctagtgttttttcctagctataagttgttggacaaattacaa
gtgcgctggtctcaaacaggtcaatgggcacggcttaatgctcaaaaacatgtgttcgtt
gagcccaagggaagtaccgaggaacttgagcctgttttaaaagggtactatgatgctatc
cttggtaaggctcctgtcaagaaaggcagaggtggtgcaaaacagatagtgaagaatcga
ttggcaaagaattcgtcacaggaatctgcaaaagcaggagccgctcttcttgcagtttgt
cgtgggaaggtatctgaagggattgacttctctgatgacaatgctagagttgtggttatt
gttggcattccatttccaaatataaatgatgttcaagtaaagctgaaaaagagatataat
gattcattcaaatcatcaaaatgtttgttgagtgggagcgaatggtactgccatcaagca
tttcgtgctttgaatcaagctgcaggccgatgcattcgtcataaatctgactatggaggc
ataattttgattgatgagcgatataatgaggacagaaatctcgtttacatttccaaatgg
ctaaggaatgcaatcaagaagtatgatagctttcaggatacaatagatgggttgcaaagg
ttctttcaaaatgctgaggaaaaaataaaaatcaaagatcgtgacatgtttcccaagatt
aagttggaatccgaagcactttcatcactcagtgataaaagaaagctgccatggccagaa
ttaagtttgtcaaaccactcagcactgcaaaagaatcagaagataaagactgaatgtctt
agtcagaaagttccaaacattgatggagtggcagcagaccaaaaaaaggtgggtatgtgt
tatacatcgccagaagtatcaaaaatctcgtcgagatcttctcttttagtaaagaaagag
atctctccgactcccaacagtcctcgaatggcataccaactgcctgcctgcaaagttcaa
tctgattccgaaggtgtagctgatactgaggcaaactatgaagtcaaaacagaagttatc
aattttgaagaggatgattttaagcctcggtataagatgacaatcttaagtccattagaa
ggcaggtcaccacagtctcctccagttgaggaaatttctccagtggctagccccagcaac
tattctgaggtaaacatctcagtggggatcaacaatcgaaatctttcttgtctatccaca
tcagcagctactcctgaaagagccacctacagagactgtcatgagactttcatcaacaga
agtgtaaattctcactgtgagaaaaagagaaggttgagatccccaatgagctgttgcact
tactcggatcattctaattctgcaagcaaatcacactgccgtactgattatgctgttaac
atagtgcatgcggatcttaatagaaatgctgaactgtgttgtaagaatatgagcatgtca
agatgtgaaaatgttgagcttgaaagaaactacagggcagaagaggtctcagaaaagatg
cctatgcaaaaaaagcttctcattagttgcattagatgcaaaacagctcttggtttagaa
caagatgagcttcttgttacttgttcacagtcttcatcatcaaaattttacttggcattt
cttttgagacatggactatcaactattggcttcccagaggatggttttcaagcatcaact
ccagcagagatagaactattagaatgcgatgcttcttcactcaaccagaatttctttggc
aaatttagcagccagggttcatgtcattctggtgtatggtctgcaaaggatggatgcgtg
tacaaggcagtaacctgtcctttctgcttttctgaaaacacatgtgccacgatcctcggt
gtgcaagttcttgcaactgataaaccaaatcaacaattggtggaaaaggtgctcttgttc
agtgagcgtttggatgtcaagcctgagccatctaagagacaggcttcaaagacctggaga
aattctagtaactccatctcaccgccaccagtaatggacctcgagtcttttgcatataag
ccattgaagaaggatccagtaccgctgaactcaagaaggtccaagctaaggttaccttcc
acgaacaaacccacaactggtacatga
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