Panicum hallii (Hall's panicgrass): 112882228
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Entry
112882228 CDS
T07366
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112882228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112882228
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112882228
mRNA degradation factors
5'-3' decay
Decapping complex
112882228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
Beta-prop_Vps41
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
112882228
NCBI-ProteinID:
XP_025803027
LinkDB
All DBs
Position
1:complement(54182050..54190656)
Genome browser
AA seq
1351 aa
AA seq
DB search
MASPTGNPNPNPNPPFELGKLFRPPNPMPTATAAPIFPGAAGGPAGPPPPSGPYSYPPVT
PPFHRGPYLHYPQDPHAMPRPVVSFPMPNPNLNPNPSANPNAAVPGPNPGVRLMQLLGNS
GPTQLETAVSMPPPTSEFAQPQPLPAMPSAAPARMLSSTSSKVPRGRLLGGGERAVHDID
SRLPGEAHPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSL
LRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWRIDEGPDEENKPQITGKIEIAIQIVGD
VEAYHPRICWHSHKQEILFVGIGNCVLRIDTTKVGRGRDFAVEEPVKCHLEKLIDGVRLV
GKHDGDVTDLSISQWMSTRLASGSKDGTVKIWDDRKPVPLSILKPHDGQAVYSVAFLTAP
ERPNHINLITAGPLNREIKIWASTNEDGWLLPSDSESWNCTQTLELVSSLEPRVEEAFFN
QVAVLPQASLILLANAKKNAIYAVHVEYGPDPASTRLDYIADFTVAMPILSLTGTHEGQS
DGEQVVQVYCVQTMAIQQYGLELSLCSPPTADTTGFGRDPAISRVYEAPPEVAGTELSTT
TSKPPAVDQSAGNAATYSPIVASVNSEVVISCYLSAEFDPKPSASPLAYSEGDGSVHLPS
APLASKMEVPVSGAAPGTRDMDQSAFDYTTNRNMERDALKRQDTPMPMRKDILGKDELRD
GHGDVAMLPNPRLMFQVGGNATHLVTPSEIISGTLSSTENNDVSKSDGGKIQDVSSRSSR
IAEVEPKQIDESKPDQNSGLETVKETQIVCENMEKTRSLEQTVEMISERSVTTDKYSVEE
SELPSDKPTLDHTGVADENVIKKSVEMPEKSDYSAASREQSSSYTKEEKVLHPQTSGQPS
PPVSAFNSTESHEPLSSAYPPISSFPEVAATQGMLQQLIGMQKDMEKQLSTMIPASVAKE
SKKLETSLGRSMEKSIKAHIDAIWFRLQEENTKREKADTERMQQLVTLITNSINKDIPAN
LEKSLKKEISSLGPVVARAISPIIEKCLASAVSDSVQKGVGDKVCNQLDKSISGKLEATL
ARQIQMQFHTSVKQALQDALRTSFESLLVPAFEQSCKTMFEQVDGAFQKGMSEHTVAIQQ
QVEAAHTPLALTLKETINSASSITQSFSSELLDGQRKLLALVASGNTKAHNTNSLQPING
PLSGPQEVEAPLDPMKELGRLISERKFDEAFTMALQRSDVSIVSWLCSQVDLRALLAMVP
VPLNQGVLLALLQQLAVDINNETSRKVQWMTDVAMAINPADPMIAVHVRPIFEQVYSQLA
HQRALPTTSASDGTSIRVIMHVINSVLLSYK
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctcccaccggaaaccctaaccctaaccccaatccaccattcgagctggggaag
ctcttcaggccaccgaaccccatgcccaccgccaccgccgcgcccatcttccccggtgcc
gccggaggccccgcgggcccgccgccgccgtccggtccctactcctaccctccggtgacc
ccgcccttccaccggggaccctacctgcactatccgcaggacccccacgccatgccccgc
cccgtcgtctccttccccatgccaaacccaaacctcaaccccaacccgagcgctaacccc
aacgccgctgtcccgggccccaaccccggcgtgcgcctcatgcagctgctcggaaactcc
gggccgactcaactcgagaccgccgtctccatgcccccgccgacgtcggagttcgcgcag
ccgcagcctctaccggcgatgccgtccgcggcgccggcgaggatgctgagcagcaccagc
agtaaggtgcccaggggacggttgcttggcggcggggaacgagcggtgcacgatattgac
tcgaggctgcctggggaggcgcatccaccacagctggaggtgacaccgatcaccaaatac
acgtcggatccggggctcgtgctgggcaggcagatcgcggtgaaccgaacgtacatcgtg
tatgggctcaagctcgggaacatccgtgtgctgaacatcaacaccgccctccgctcactc
ctccgaggccacacacagagggtgacggacatggctttctttgctgaggatgtccatcgt
ttggcaagcgcgagcgtagatgggcggatatatgtgtggaggattgatgaggggcctgat
gaggaaaataaaccacaaattactggaaagattgaaattgccatccaaattgtaggcgac
gttgaagcttaccatcccaggatatgttggcactcacataagcaagagattctgtttgtt
ggaattgggaactgtgtgttgagaatagacacaactaaagtaggaagaggaagagacttt
gctgtggaagaacctgttaaatgtcatcttgagaaacttattgatggtgttcgcttagtt
ggtaagcatgacggtgatgtgacggatttgtccatctctcagtggatgagtacccgcttg
gcctcagggtcaaaggatggcacggtaaagatctgggatgatcgcaaaccagttcctttg
tccattctgaagccacatgatggtcaagctgtttactcagttgcttttcttacagcacct
gagcggccaaatcatataaatctaattacagcgggtcctctgaaccgagaaattaaaatt
tgggcttctactaatgaagatggttggttgttgccaagtgattctgagagttggaactgt
acccagaccttggaacttgttagttctctggagcctagagtggaggaggcatttttcaac
caggttgcagtactgcctcaagcgagcctgattttgcttgcaaatgctaaaaagaatgct
atttatgctgtccatgttgagtatggcccagatcctgcctctactcgcttggactatata
gcagatttcaccgttgcaatgcctattttaagcctcactgggacacatgaaggccaatct
gatggtgaacaagttgttcaagtctattgtgtccaaacaatggccattcaacaatacgga
ttagagttatcactctgttcgcctcctacagctgatactactgggtttggaagagatcca
gctatttcccgtgtttatgaggcacctccggaagtggcaggaacagagttgtctacaaca
actagtaaaccaccggctgttgaccagtctgcaggtaatgcagctacatattctcctata
gttgcttcagttaattcagaagtagttatttcttgttatttatctgcagagtttgatccg
aaaccatcagcttcgccgcttgcatactcagaaggtgatggttctgtgcatctcccatct
gcacctcttgcatcaaagatggaggttcctgtatcgggagcagcacctggaactcgtgat
atggatcaatcagcttttgactatacaacaaacaggaacatggagcgtgatgctttgaaa
aggcaagatacacccatgcccatgagaaaggatatcttaggaaaggatgagctaagagat
ggtcacggtgatgttgcaatgcttccaaatccccgtttgatgtttcaggttggagggaat
gctacacacttggttactccatctgaaattatatcgggcactctctcatctactgaaaac
aatgatgtctctaaatccgatggaggaaaaattcaagatgtttccagtagaagctctcgg
attgcagaagtggaaccaaaacaaattgatgagagtaagccagatcaaaattcaggactt
gaaactgtgaaggaaactcagattgtttgcgagaatatggagaaaactcgttccttggag
caaactgttgaaatgatcagtgagcgctcagtgacaactgacaagtacagtgtggaagaa
tcagagttaccatctgataagccaacgttggaccatactggtgttgctgatgaaaatgtc
attaaaaagtctgtggaaatgcctgagaaaagtgattactctgctgcttccagggagcaa
tcatcttcgtatacgaaggaggagaaagttttacaccctcaaacatctggtcagccatct
cctcctgttagtgctttcaactcaactgagtcacatgagcctttgagttccgcatatcct
cctatcagctccttcccagaagttgctgccacacaagggatgctgcaacagctcataggg
atgcagaaggacatggaaaagcagttgagtactatgattcctgcctcagtggcaaaggaa
agcaaaaaactcgagacgtcattagggcgcagcatggagaaatctatcaaggctcacatt
gatgccatttggtttcgtctccaggaggaaaacactaagcgtgaaaaggctgacacagag
cgaatgcagcaattggttactctcattacaaactcgataaataaggacattcctgctaat
ctggagaagtcacttaagaaagaaatctcatcacttgggcctgttgttgctcgagcaatt
tcacctattattgagaagtgcctagcctctgcggtttctgattcagttcagaaaggggtg
ggtgacaaggtgtgcaatcagctggataaatctattagtggaaaacttgaagctacactt
gccaggcaaatccaaatgcagttccatacatctgtaaaacaggctcttcaggatgctttg
cgcactagctttgaatcattgctggttccagcatttgaacaatcatgcaagacaatgttt
gagcaagtagatggtgcatttcagaaaggaatgtctgagcacacagttgctattcagcag
caagttgaggcagcacataccccattagcgttaacattaaaggagaccatcaattctgca
tcatcaatcacccagagtttttcatcggagttacttgatggccagcgcaagctattggca
cttgttgcttctgggaacaccaaggcacataataccaattctttgcaacccattaatggt
cctttgagtggcccccaagaggttgaggctccgttagatccgatgaaagagctgggcaga
ctgatatctgaacgcaagtttgatgaggcatttacaatggccctacaaaggagtgatgtt
tccatagtgtcgtggctatgctctcaggttgatttgcgtgcattattggcaatggtccca
gtcccacttaatcagggggttctcctggccctcttgcagcagctagcagttgacataaac
aatgagacatctcgaaaagttcaatggatgacagatgttgccatggcaataaatccagca
gacccgatgattgccgtgcatgtgcggcccatctttgagcaagtctacagccagttggcc
caccagcgggcactccccaccacgagcgcatcggatggcaccagcatccgtgtgataatg
catgtaattaactcggttctgcttagctataagtga
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