Panicum hallii (Hall's panicgrass): 112882346
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Entry
112882346 CDS
T07366
Name
(RefSeq) uncharacterized protein LOC112882346 isoform X1
KO
K06100
symplekin
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112882346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112882346
03019 Messenger RNA biogenesis [BR:
phai03019
]
112882346
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112882346
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
112882346
U7-dependent histone pre-mRNA processing factors
112882346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
HEAT_EZ
HEAT
UPF0253
Motif
Other DBs
NCBI-GeneID:
112882346
NCBI-ProteinID:
XP_025803160
LinkDB
All DBs
Position
2:57714165..57723480
Genome browser
AA seq
1255 aa
AA seq
DB search
MLAARNPSPSFHAHDRPPPPAHDIAERLSHLRQIRREPLPRRVARIADLHTDEASPVRKH
VAEIIGEVGSKHMAYLPDIIPCLLHLLNDEAPAVVRQAIKTGTALFAKLLQHLVIQGLFS
TGGIDDALKSSWEWLLKFKSAVSLMAFQTTGNEGVRLLAVKFVEKTVLMYTPDPNIPSDP
PSEATKDTGFNVAWLRGGHPLLNVGDLAMEASQNLGLLLEQLKSPKVKSLSTSMIIVFVI
SLSAIAQRRPSFYGRILPVLLSLDPASSIIKLRVPGAFHALKSAFSACLECTHSSAEPWR
ARLLEAQNIINQGDSIEDTANAGKNFGDTSNREESWPLMERSTDSSNKRSLAEDMNQMTE
DDGHSSKRVRHSLDVQEHSEEASKRNVESTSVDISSGQPISIRTGNSEAVYQLIGMFAAL
AAQGDRAAGSLQILSSSIASDLLAEVVMVNMQHIPISRPEADQHQLPSTSSGDGIPLSSS
FSLLASLLKRAGQIDQDEVPPAKESAVVLSDADDIMTVPASSPVPSSVSLPMEENSSSPA
VPYMETAEVKVTSAGTNSLIDILESSETSHASTEPQGTQEHASSFISSLPADNSSAGLSL
AQSSETRSPSSSILEANHSQLSSLNSLGSQYALPKLVVSNIDLSDKAKDLLQKESFLRIL
ESDKQEASGGSIARLPLLAHLGVEFPLELDPWELLQKHVLSDYANNEGHELTLCILNRLY
REAEQDQDFLSSRTATSVYESFLLTVAENLRDMFPASDKSLGKLLCEIPYLPEGVLKLLE
GLCSPGSDEKQDKDIQSGDRVTQGLSAVWNLIMLRPSNRDRCLGIALQSSTHHLEEVRMK
AIRLVANKLFPMASISKKIEDFANEKLNSVLEVIPSGDSAATETATPEAHNDGVLENLAA
SVADAQTLMSLYFALCTKKHSLLRHVFAIYGSLPQAAKQAVHRQVPILIRTIGSSPDLLG
IISDPPGDSRDLLMQVLQTLTGAAVPSKELTSSIKNLHSKTKDVEFLFAILSHLPKDEIL
PVFPSIVNLSMDKFQAALSRILQGSSRNGPSLDPSEILIAIHVIDPDKEGIPLKKVMDAC
SACFEQRTIFTQQVLAKALNQLVEQIPLPLLFMRTVMQAIGVFPALVDFVMEIMSRLVSK
QIWKYPKLWVGFLKCAILTRPQSYGVLLQLPAPQLENALSKNPTLKAPLVEHAEQPNVRS
TLPRSTLVVLGLAEDQQQPAPAVSQAQSSQNQAADTSSSAADMTTEVTQESSAAS
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgctggccgcccggaatccctcgccgagcttccacgcgcacgaccgccctcctccgccg
gcacatgacatcgcggagcgcctcagccatctacgccagattcgcagggaaccgctcccc
agacgcgtcgcccgcatcgccgacctccacaccgatgaggccagccccgtgcgcaagcat
gtagccgagatcattggtgaggtcgggtcaaaacacatggcgtacctaccagatatcatc
ccttgtttgctgcaccttctgaatgatgaggcgcctgcagttgtcaggcaagctatcaaa
acaggaaccgccttgtttgccaagctgctccaacacctagttatccagggattattctcc
actggggggattgatgatgcacttaaatcgtcatgggagtggctgctcaaattcaaatct
gctgtctcgctcatggcatttcagaccactggcaatgaaggtgtcaggttactggccgtt
aagtttgttgaaaaaacagttcttatgtacacaccagatcctaatatcccatcagatcca
ccaagcgaagctacgaaagatacgggattcaatgtagcatggttacgaggaggtcaccct
ttgcttaatgtcggggatctagccatggaagccagccagaacctcggattgttgctagag
cagctcaagtctcctaaagtaaaatcactcagtacttccatgatcattgtcttcgttatt
agtctctcagctattgcccaaagaaggccttccttttatggacgcatactgccagtttta
ctttccttggatccagcaagttcaattattaaattgcgagtcccaggtgcattccatgct
ttgaagagtgccttttctgcatgcctggaatgtacacattcaagtgctgagccgtggcga
gcacgtctattggaagctcaaaatattatcaaccagggggattcaatagaagatacagca
aatgctggtaagaattttggggacacatcaaacagggaagaatcgtggcctctgatggag
agaagcactgacagtagtaacaagcgtagtctggctgaggacatgaatcaaatgacagaa
gatgatggtcactccagtaaaagagtcagacattcacttgatgttcaagaacatagtgaa
gaggcaagcaagagaaatgttgagtcaacctctgttgatatctcatctggccagcccatc
tctataagaactgggaattcagaagctgtgtatcaattaattggcatgtttgcggcactg
gctgcacaaggtgacagagctgctggatcactgcaaatcctttcatccagtatcgctagt
gacttattagcggaggttgtaatggttaacatgcaacacatccctatttctcgtcctgaa
gctgaccaacaccagcttccttctaccagctctggagatggaattccattgtcaagttcc
ttctctctgttggcgtctctactgaagagagcgggtcaaattgatcaagatgaagtgcct
ccagctaaggaatctgcagtagtgttatctgacgcagatgatatcatgacagttcctgct
agttcacctgttcctagttcagtaagtcttcccatggaagagaacagtagcagtcccgct
gttccatatatggaaacagcagaggtcaaagtaaccagtgcaggtaccaatagtttgatt
gatattctagaatcatcagagacttcccatgcttcaacagaacctcagggaacccaagag
catgctagcagttttatcagttcattgcctgctgataattcctctgctggccttagtttg
gctcagtcttcagaaactcgcagcccaagttcttctatactggaagcaaaccactcacag
ctttcatctttgaattcccttggttcacaatatgctcttccaaagttggttgtcagtaac
attgatctcagcgacaaggccaaagatctgcttcaaaaagagtcatttttgcgcattctt
gagagtgataagcaagaagcaagtggtggttcaattgctcgccttccattgcttgctcac
ttgggtgttgagtttcctctggaattggacccatgggagcttctccaaaagcatgtcctc
tctgattacgcaaataatgaggggcacgagttgactctatgcatcctgaaccggttatat
cgtgaggccgagcaggatcaagattttctttcatctagaactgctacatcagtttacgaa
tcctttcttctgactgtagctgaaaatcttcgagacatgtttccggcttcagataagtcg
cttggcaaattgctttgtgagataccatacttaccagaaggtgtgttgaaacttctagaa
ggtttatgttctcctggaagtgatgagaagcaggacaaggatatccagagtggtgatagg
gtaactcaaggtctcagtgctgtttggaaccttatcatgctaagaccttcaaatcgggac
agatgtctggggattgctttgcagagttcaactcatcatttagaggaggtccgcatgaag
gcaatacgtttggtagcaaataagttatttcccatggcaagcatttccaaaaagattgaa
gattttgcaaatgaaaaacttaattcagttctagaagtgattccatctggtgattctgca
gctactgaaacagctacacctgaagcacacaatgatggtgttttagaaaatttagcagct
tcagtggcagatgctcagactctaatgtcgctgtattttgcattgtgcaccaagaaacat
tccctcctcagacatgtatttgcaatatatggtagtctacctcaagctgccaagcaggca
gttcaccgacaagtaccaattctaatacgcacaataggctcctctcctgatcttcttggg
atcatctcagatccaccaggtgacagccgggacctcctaatgcaggttttacaaaccctc
actggtgctgcagttccatccaaagaattgacttcttccataaagaacttacattctaaa
acaaaggatgttgagttcctttttgcgatcttgtctcatctgccaaaagacgagatcctg
cctgtgttccccagtattgttaatctttccatggacaagtttcaagccgccctttcacga
atcttgcagggatcatctcggaatggcccttctcttgatccatcagaaattttaattgcc
attcatgtaatagatcctgataaggaaggaataccactcaaaaaggttatggatgcatgc
tctgcttgcttcgagcaaagaacaatattcacccagcaagttttggcaaaagcactaaat
caactggttgagcaaattcctcttcctttgctattcatgaggactgttatgcaagctata
ggtgtttttcctgcattggtggattttgtgatggagatcatgtcacgccttgtgagcaag
cagatttggaaatatcctaagttatgggtaggatttctgaagtgtgctatcttgacgaga
cctcagtcatatggtgtgttactgcagttaccagctcctcaacttgagaatgccttgagt
aagaaccccacactgaaggcacccttggttgagcacgcggagcagccaaatgtccgatct
actcttccaaggtctactttggtggtactgggtcttgctgaagatcaacagcaaccagca
ccagcagtaagtcaagcgcagagcagccaaaaccaggctgccgataccagtagctctgcc
gcagacatgactacagaagtaactcaggagtcttctgctgctagttag
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