Panicum hallii (Hall's panicgrass): 112882453
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Entry
112882453 CDS
T07366
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112882453
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
phai01002
]
112882453
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112882453
03036 Chromosome and associated proteins [BR:
phai03036
]
112882453
Peptidases and inhibitors [BR:
phai01002
]
Metallo peptidases
Family M1
112882453
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112882453
Coactivators
SAGA/TFTC/STAGA complex
112882453
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
112882453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
Peptidase_M1_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
112882453
NCBI-ProteinID:
XP_025803302
LinkDB
All DBs
Position
2:42575735..42590295
Genome browser
AA seq
1402 aa
AA seq
DB search
MAKARKQKGDGGGSGGGATVLHQKLCVSIDMENQLIYGYTEIKVLLADNDTFALHADNMT
IRSILVDGETAEFDYSPHWKNECDQPNWSSISCLKTAADAACSTYTSALNREAVPNLIVS
YERSVKSITEQQLEENSEKHEENSGRLEEHGLKPVQASDNQIVNGCNGSAVEEQKEKENG
NEKGKENGIETENEKVKNIKLVHIDYILEKAETGIHFVGNVLHSSSQIRRAHCWFPCIDS
TTQRCPFDLEFTVSMDLIAVSNGDLLHQVLSKEDPTKKTYVYKLNTPVSAQWISLVVGPL
EVLPDSNDTSVSHICLSPALSKLQNTIAFFHDAYSCYEDYLATPFPLGLYKQIFLPPEMT
VLPTSLGASTCIFSSDILHDEKVIDQIIGTRIKLAYALAKQWFGIYTSAEEPNDEWLLDG
LAGFLTEVFIKRFLGNNEARYRRFKANSTVCESDVSGATALSSPAASSDLYGTQTIGSYG
KVRSLKAVAVLQMLEKQMGPDSFRKILQVIVAPNRASRTLSTKEFRHLANKVGNLERPFL
KEFFPRWVESCGCPVMRLGISYSKKRNMIELAVSRGCTAKATPDSDSHINGDIREGDAGW
PGMMSVRVHETDGVYDHPVLPMAGEALQVVEIQCHSKLAAKRVWKSKKSTKFDGSDDNID
VSTQENRTSIDSPLQWIRVDPEMEYLAEIHFHQPVQMWINQLEKDKDVISQSQAISVLEK
LPQLSSAVINALNNFLNDTKAFWRVRVEAAYALAVTASEESCLDASDFPQVPYMSLFCFV
QATDLAGLLHLVKFYKSRRFDTDIGMPRPNDFHDIPEYYVLEAIPHAVALVRSSDKNSPK
GAIEFILQLLKYNDNNGNIYSDVYWLSAMVQSIGELELGQQGMGFLSSLLKRIDRLLQFD
NFMPGYNGVLTVSCIRTLARIARRVSSSICLDRICVLIAPFRNMDKPWKVRIEASRVLID
LELHHKGLDAALLLFLKYVDEEKSLRGATKLAVHVLRLCQASTVPHFNDQISLTTLIGLL
HLLAGAKAYNNVFLRHHVFCIVQVAAGRSPTLFGVPKVVTPALVAQDICSDQHTKADSSI
PQPSRPQEPSTSTPSVREVLPTSGPTKDADNISNCSERRNVVKIRVKLTASSSKASDADQ
RVHSHGGRNENEAGPCSSMSVDAPMVGAATEPLNVSNHNIEEQNSCHDRESRMSASVGNA
KLMDRHEISKELQCTADSRLDVLPKDQFSPAVNPLGVVDKPGSQLEVVSTSYDGNQAPES
VSGVETKERKKKDKKDKKRKRDEKRDKKDDPEYLEKKRLKKEKKKMEKESARKQLEGEEK
ATLEERKIVKPSGLQEVLPARPPTAPVRSAEPAPSQSAEPAAVRSSEPQISSKETTVDTA
RTAAKPRIKIKVKPLLRKPEGS
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagcgaggaagcagaagggtgatggtggcggttcaggcggaggcgccaccgtg
ctccaccaaaagctctgcgtctccatcgacatggagaaccagctgatctacgggtacacc
gagataaaagttcttctagccgataacgacacatttgctctacatgctgacaatatgaca
atcaggagcattcttgtggatggtgaaactgccgagtttgactattcccctcattggaaa
aatgaatgtgatcaaccaaattggtcttcaatatcatgtttgaagactgctgctgatgca
gcatgctcaacatatacttcggctttaaatcgagaagctgtaccaaatcttattgtgtca
tatgagagatcagttaagtcaataactgagcaacagttagaagaaaacagtgaaaaacat
gaagaaaatagtggaaggcttgaagaacatggtttgaagcctgttcaagcttctgataat
caaattgttaatggctgcaatggttctgcagtggaagagcaaaaggaaaaggaaaatgga
aatgagaagggcaaggaaaatggaattgaaactgaaaatgaaaaggtgaagaacataaaa
ctggtccacatagattatattttggagaaggctgaaactggcattcacttcgtcggcaat
gttctgcatagcagcagtcagataagacgggcacattgttggtttccttgcattgatagc
actacacaacgctgtccatttgacctagagtttacagttagcatggatttaattgctgtc
agcaatggtgacttacttcaccaggtcttaagcaaggaagatcctacaaaaaaaacttat
gtgtataagttgaacactccagttagtgcacagtggatatccttggttgttgggccactt
gaagttctccctgacagcaatgacacaagtgtctcacacatatgtttatcccctgctttg
tcaaagcttcagaacacaatcgcatttttccatgatgcatacagctgttacgaagactat
cttgctacaccatttcccttaggtttgtacaagcagatttttcttccacctgaaatgaca
gtgttaccaacaagcttaggagcctccacatgcatattcagttcagatatcttgcatgat
gagaaggttatagatcagataattggcacaagaatcaaactcgcctatgcccttgcgaag
caatggtttggaatatacacaagtgcagaggagcccaatgatgaatggctattggatggt
ttggctggttttcttactgaggtatttatcaagcgtttccttgggaataacgaggcacgg
tataggcgcttcaaggctaacagcaccgtatgtgagtctgatgtaagtggtgcaactgct
ttgagctctcctgctgcttcaagtgatctatatggaactcaaacaattggttcatatggg
aaagttcgttcattgaaggcagtagctgttcttcaaatgttggagaagcagatggggcca
gactcctttcggaagattttgcaggtgatagtggccccaaatcgtgcctcaagaacactt
agtacgaaagagttcagacaccttgcaaataaggttggtaacctcgaacgcccattccta
aaagaattctttccacggtgggtcgagtcttgtggatgtccagttatgagattgggaatc
tcatatagcaaaaaacggaatatgattgaattagccgtttcaaggggttgcaccgcaaaa
gctacacctgattctgatagtcatatcaatggtgacattcgagaaggcgatgctggatgg
ccaggaatgatgagtgtacgggttcatgaaactgatggggtatacgatcatccagttctc
ccaatggctggtgaagctttgcaggtggttgaaatacaatgccattccaaactagcagcg
aagcgtgtttggaaatcaaaaaaaagcaccaaatttgatggttctgatgacaacatagat
gtctctactcaagagaaccgcacaagcattgattcgcctttacaatggattagagtagac
ccggagatggaatatcttgctgagatccattttcaccagcctgttcagatgtggatcaat
caattggagaaagacaaagatgttatatcacagtcacaggcaatatctgtcctggagaaa
ttacctcagctttcttctgctgtgattaatgccctcaataatttcctaaacgacacaaag
gccttctggagagttagagttgaagcggcatatgcattagcagttacagcatctgaggaa
tcttgtttggatgcatctgattttccacaagtaccttacatgagtttattttgcttcgtt
caggcaactgatttagctgggttgcttcatctggttaagttttataaaagccgacgcttt
gatacagatattggaatgcccaggccgaacgacttccatgatatcccagagtactatgtt
cttgaggcgatcccccatgcggtagctcttgttagatcatcagacaagaatagcccaaag
ggagccattgagtttattcttcagctcctgaagtacaatgataacaacggaaatatttac
tctgatgtgtactggctatctgcaatggtacagtcaataggagaactggaattaggccag
cagggcatgggcttcctatcctctctactcaagcgaattgatcgcctcttgcaatttgac
aactttatgcctggttacaatggggtcttgactgtcagctgcattcgtacccttgcacga
atagcaaggagggtgtcatcttccatatgccttgatcgcatttgtgtactaattgccccc
tttcgcaacatggacaaaccatggaaagttcgaattgaagctagcagggttcttattgat
cttgagttgcaccataaaggccttgatgcagctcttttattgtttttgaaatatgtggat
gaagaaaagtctttgcgaggagcgacgaagttggctgttcatgtcttgcgtttatgtcaa
gcaagtactgttccccactttaatgatcaaataagtttgacaactctaattggtcttctc
cacctgcttgctggtgcaaaggcatacaataatgtatttcttcgtcatcatgtgttctgc
atagtgcaagttgctgctggaaggtctccaacattatttggtgttccaaaggttgtcacg
cccgctctggtggcccaggacatatgtagtgatcaacacactaaagctgattcctctatt
cctcaaccatcaaggcctcaagaaccttccactagcactcctagtgtgcgtgaggtctta
cctacctctggacccactaaagatgctgataatatatctaactgcagtgaaagaaggaac
gtcgtcaaaattagggtgaagcttactgcatcttccagtaaagcatcggatgctgaccag
agagtccattctcatggtggaagaaatgaaaatgaagcgggtccatgtagttctatgtca
gtggatgccccaatggttggagcggcaactgaaccattaaatgtaagcaatcataacatt
gaggaacagaactcatgtcatgaccgtgaatcaaggatgtcagcaagtgttggcaatgct
aaactaatggacaggcatgagatttccaaggaactacagtgcaccgctgattcaaggctg
gacgttcttcccaaggatcagttctctcctgccgttaatcctctgggagttgtagacaag
cctggtagtcagcttgaagtagtctccaccagttatgatggaaaccaagctccagagtct
gtgagtggagtggaaacaaaagagaggaagaaaaaagataagaaagataaaaagcggaaa
cgtgatgaaaaacgagataagaaagatgatccagagtatctggagaaaaagcgacttaag
aaagagaagaaaaaaatggagaaagagtcagccagaaagcagctggaaggtgaagaaaag
gctactcttgaagagcggaaaatagtgaaaccttcagggttgcaggaagttttgccggca
aggccaccaacagctccagtgcgaagtgctgaaccagctccatcgcaaagtgctgaacca
gcggcagtgcgaagctctgaaccccaaatatcaagcaaggaaacaaccgtagatactgca
cggacagcagccaaaccaaggataaagatcaaagtcaagcccttgctaagaaaacctgaa
gggagttga
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