Panicum hallii (Hall's panicgrass): 112882604
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Entry
112882604 CDS
T07366
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3-like
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03020
RNA polymerase
phai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112882604
09124 Replication and repair
03420 Nucleotide excision repair
112882604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112882604
03400 DNA repair and recombination proteins [BR:
phai03400
]
112882604
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112882604
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112882604
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
Motif
Other DBs
NCBI-GeneID:
112882604
NCBI-ProteinID:
XP_025803480
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All DBs
Position
2:15634208..15640690
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AA seq
327 aa
AA seq
DB search
MDRPAAGASYQRFPRVRIRELRDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIE
VNSSVLNDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFLLSARATDSD
QTLEVTANDLRSADPKVCPVDQARAYQQALNADYDTNAGEQRGILIVKLRRGQELRLRAI
ARKGIGKDHAKWSPAATVTFMYEPDIHINEELMDTLTLDEKRSWVESSPTKVFHLDPITK
QVTVCDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFIFTVETTGAITAYELIMNAITV
LRQKLDAVRLQDDDGDLGELGAHLGGP
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtccggcggccggcgcgtcgtaccagcgcttcccccgcgtccggatccgcgag
ctcagggacgactacgccaagttcgagctccgcgacaccgacgccagcatagccaacgcc
ctccgccgcgtcatgatcgccgaggtccccacggtggccatcgacctcgtcgagatcgag
gtcaactcctccgtcctcaacgacgagttcatcgcgcaccgcctggggctcatccccctc
acctccgccgctgccatgcaaatgcgcttctcccgggactgcgacgcctgcgacggcgac
ggctcatgcgagtactgctccgtcgagttcctcctctccgctcgcgccaccgactccgac
cagacgctcgaggtcacagccaacgacctgaggtccgccgaccccaaggtctgccccgtc
gaccaggcgcgcgcctaccagcaggcgctcaacgccgactacgacaccaacgccggggag
cagaggggaatacttattgtaaagctgcgtcgggggcaagaactgaggcttcgtgccatt
gctaggaaaggaatcggcaaggaccatgccaaatggtcaccagctgctaccgtgactttc
atgtatgagcctgacatacatatcaatgaagaactcatggatacattgacgcttgatgag
aaaagaagttgggttgaaagcagccctacaaaagtatttcaccttgatcctattaccaaa
caggtgacagtgtgtgatgctgaggcatacacctatgacgatgaggtgatcaagaaggca
gaggccatggggaagccaggcctggtggagatcaacgcgaaggaggacagcttcatcttc
accgtggaaacaactggtgccatcacggcctacgagctgatcatgaacgcgatcacggtc
ctgcggcagaagctggacgccgtccgcctccaggacgacgacggtgaccttggcgagctc
ggcgcccaccttggtggaccttaa
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