Panicum hallii (Hall's panicgrass): 112883309
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Entry
112883309 CDS
T07366
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03013
Nucleocytoplasmic transport
phai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112883309
03015 mRNA surveillance pathway
112883309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112883309
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112883309
mRNA cycle factors
P-body specific factors
112883309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
DDHD
PsiA
Motif
Other DBs
NCBI-GeneID:
112883309
NCBI-ProteinID:
XP_025804379
LinkDB
All DBs
Position
1:complement(50283658..50294173)
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AA seq
1202 aa
AA seq
DB search
MDNAQNENRADTAQNENRADTKKDDEARQSKPDDEEARLEEYKKIIDQKTSLRWSNLNPE
RPDANYLRTLDSSIKRNTTVIKKLKTINDEQKDGLMDELKSVNLSKFVSEAVSYICEAKL
RSADIQAAVQVCSLLHQRYKDFSPCLIQGLLKVFFPGKSGDDLDADKNSRAMKKRSTLKL
LIELYFVGIVEDASIFVNIIKDLTSAEHLKDREATQTNLSLLSTFARQGRFLVGLQSHGQ
EAYDEFFKDLNVTADQKKFFKKALNSYYDVVAELLQSEHVSLRLMEAENAKVLSAKGELS
DENAASYEKLRKSFDQLLRGVSSLAEALDMQPPVMPDDGNTTRVTTGTDVSPSSGKESSA
LEPIWDDEDTKAFYESLPDLRAFVPAVLLGEVEPKSNEQHAKGREQSSESTSEQETEVHD
NAQTSATEHQLEVKVDDGVKDSEDKDKDRGKDGEKEKSKEKDLDKKNEREKEKVRALDGA
SLDNLLQRLPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVNRTSLELLPYYSRLVA
TLSTCMKDVPIMLLSMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKMAPPALVFSC
LKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTL
VENAYYLCKPPERSARISKVRPPLHQYIRKLLFSDLDKSSVEHVQRQLRKLPWAECQQYL
LKCFLKVHKGKYSQVHLIALLTASLSRHHDDFAIAVVDEVLEEIRVGLELNDYGMQQRRL
AHMRFLGELYSYRHIDSSVVFETLYLIIVFGHGTPEQDVLDPPEDCFRIRLVITLLQTCG
HYFSKGSSKRKLDKFLLHFQRYIISKGPLPLDIEFDIQDLFADLRPNMSRYSSIEELNAA
LVELEENERSAPVEKAENERHSDNESQKRQPRDGAPSVNGQSATNGVEENGKDHEVADSE
SYSGSGSIDGREDEDILSEDKSNDGSDNEGDDEDDGIPVGSDEDENVEVRQKVMQVDLKE
QEDFDRELKALLQESLESRKSEARSRLPLNMMVPMNVLEGSKDQRATESESGEETVDEEG
GNVGSSKVRVKVLMKKGHKQQTKQMLIPADSSLVLSTKQQEAAELEEKQSIKRRILEYNE
REEEELNGGASQMGNWGQGASATSSIRSGGRGSWDGSTRGGGRQRHHIAGSGGFYHSYGR
RR
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggataatgctcagaatgagaaccgagctgacactgctcagaatgagaaccgagctgac
accaagaaagatgatgaggcgcgccaaagcaaaccggatgatgaggaggcccgtcttgaa
gaatataaaaaaattattgatcaaaagacttccctccgctggagcaacctaaatcctgaa
aggcctgatgcaaactacctgagaactctggactccagtatcaagcgaaatacaacagtt
ataaaaaagctgaagacaataaatgatgaacagaaggatgggctaatggatgagttgaaa
agtgtgaatttgagtaaatttgtcagcgaagcagtttcttatatctgtgaggccaaactt
cgctctgctgatatacaagctgcagttcaggtttgctcgctgcttcatcaaagatacaag
gacttctctccttgtcttatacaaggtctactgaaggttttctttcctggaaaatctgga
gatgatttggatgcagacaaaaattcaagagccatgaagaagagaagcacattgaaactt
ctgattgaactgtattttgttggaattgttgaagatgctagcatatttgtaaatatcata
aaggatcttacatcagcggaacatttgaaggaccgtgaagcaactcagacaaatttgtct
cttctctccacttttgctcgtcaagggaggtttcttgtagggctacagtctcacggtcaa
gaagcttatgatgaattctttaaggacctaaatgttactgctgatcagaagaagttcttt
aagaaagccttgaactcttactatgatgttgtagctgaactactacaatcagaacatgtg
tctcttcgtctaatggaggcagagaatgcaaaagttttaagcgccaaaggtgaactaagt
gatgagaacgcagcctcatatgagaaactcaggaagtcttttgatcagttgctacgtggt
gtatcctcgctggccgaagctcttgacatgcagcctccagtgatgccagatgatgggaat
acaacgagggttactacaggaactgatgtctcgccctcttctggaaaagaatcatccgca
ctggaacctatttgggatgatgaagataccaaagctttttatgaatctttacctgatctc
agagcatttgtgcccgctgtattgttgggagaggttgaaccaaagtcaaatgagcaacat
gctaagggccgtgagcaatctagtgaatccacttcagaacaagagactgaagtacatgac
aatgctcaaacttctgccactgaacatcaactggaagttaaagtagatgatggagtcaaa
gatagtgaagataaagataaagataggggaaaagatggagaaaaggaaaaatctaaggag
aaggatctggataagaaaaacgaaagagagaaagagaaagttagagccttggatggtgca
agtttggataacctcctgcagaggttgcctggatgtgttagccgcgatcttattgatcaa
ttgacggttgagttttgctacctaaattctaaagcaaatcgaaagaaacttgtgcgtgcc
ttattcaatgtcaataggacttcactggaactgttgccttactattctcgtttggttgca
acactatcgacttgtatgaaagatgttccaattatgctactctctatgcttgaagaggag
ttcaactttttaataaataagaaggatcaaatcaacattgaaacaaaaataaaaaacata
aggtttattggggagctgtgcaagttcaagatggctcctccagctcttgtttttagctgt
ttgaaggcctgcctagatgatttcagccatcataacatcgatgtagcctgcaaccttctc
gagacttgtggacgttttttgtatcgctcacctgaaactacaattcgcatggccaacatg
ctggagatactgatgagattgaagaatgtcaaaaatttggatccccgtcacagtacactt
gtagaaaatgcgtactacctttgtaaaccgccggaaagatctgcgcgaatctcaaaagtt
aggccacctttgcatcaatacataagaaagttgcttttctcagatcttgataaatcaagt
gttgaacatgttcagcgccaattacgcaagttgccttgggcagagtgtcaacagtacctt
ttaaagtgctttctaaaggttcacaaaggaaagtacagccaagttcatctgattgctctt
ctcactgctagcctcagccgccatcatgatgactttgctattgcagtggtagatgaggtt
ttagaagagataagggttggattggagttgaatgactatgggatgcaacaaagacggctt
gctcacatgaggttccttggggagctatacagctacaggcatatagattcatcagttgta
tttgagacactgtaccttatcattgtgtttggtcatggaactcctgaacaagatgtattg
gatccaccagaagactgcttcaggatcaggttggtcattacacttttacagacctgtggt
cactacttcagtaagggatcttcaaaaaggaagctcgacaaattcttgctacactttcaa
agatacattataagtaaagggcccttaccacttgacatagaatttgacattcaggattta
tttgctgacctccgaccaaacatgtctaggtattcatcaattgaagaactaaatgctgca
ttagttgagctcgaggaaaatgaacgttcagctccagtagaaaaggctgaaaatgaaaga
cactcggacaatgaatctcagaaaagacagccacgagatggtgctccatctgtgaatggt
caaagcgcaacaaatggagttgaggaaaatggtaaagatcatgaagtagcagacagtgag
agctattcaggcagtggcagcattgatgggcgggaagatgaggatatattatccgaggat
aaatcaaatgatggatcagataatgaaggtgatgatgaagacgatggcattcctgttggt
tctgatgaagatgaaaatgttgaggttagacagaaagtcatgcaggttgatctgaaggag
caagaagattttgatcgagaactgaaggcccttcttcaggagagcttggagtcgcgaaaa
tcagaggctcgttcaagactccctttgaacatgatggtaccgatgaatgtcctcgagggt
tcaaaagaccaaagggccacagaatccgagagtggggaagaaacagtggatgaagagggt
ggcaatgttggtagcagcaaggtgcgtgttaaggtgctgatgaagaaaggacacaaacaa
cagacgaagcaaatgttgatccccgctgacagctcacttgtgctaagcacaaagcagcaa
gaagctgctgagcttgaggagaagcagagcattaagcggaggatccttgaatacaacgaa
agggaggaagaagagctgaatggaggagcatcgcaaatggggaattggggtcaaggagct
agcgctactagcagtatccgatcaggtgggcggggcagctgggatggctccacacgggga
ggtggtcggcaacggcaccacattgcgggttcaggtggtttttatcacagttatggcaga
aggagatag
DBGET
integrated database retrieval system
