Panicum hallii (Hall's panicgrass): 112883775
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Entry
112883775 CDS
T07366
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112883775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phai04121
]
112883775
Enzymes [BR:
phai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
112883775
Ubiquitin system [BR:
phai04121
]
Ubiquitin ligases (E3)
HECT type E3
112883775
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
mTOR_dom
Motif
Other DBs
NCBI-GeneID:
112883775
NCBI-ProteinID:
XP_025804774
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All DBs
Position
3:6405227..6412322
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AA seq
1356 aa
AA seq
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MEVAEEAGEAVLAYALAAIADEGAGAGETAAALAALCEVLALSGPDLILAIPSARLAKRL
PKLVAASAAGDGDGDVPLLAARAMAEACEGAPPWAARFAQHGAVEALRDRLLAVDCIELA
EECLRALDTISTECPDECLKRGVAAAVLQFFDFFSTNKQKVALQIVSNIFNDYDEEDVPT
VMEAVPALCNLLQSSDKTILESAISCLALVAAGASENAEHMGKLCEANAVEATMSLMGNE
GWKTLSDDILTGILGLLKNLASISEKAVESLFKLDFCELFKQMVTYYSSSNRDNDKVQML
VELIYQLMLPLGASEQHAKLVTAKKNVIMAQSTYMNQLASIFSLMVQVAKCAALSSICYN
CIAVISNIVELSTPDFLMELQNTVNLSSFLNFLLARKNCHIILQALKISRILLEKCQQFF
LETFTKEGVKHSIDSIVSHEKNSSHQSKRKNNMNESCLCFDLESSSTGEVCRVENNAVMK
LAEDIKKSFFSVKGSKRSPHRLGFALKSFRDFFVRLNVHATTPPTENPDSCKQLTDLSRR
LLSDELPVTSTFEFVQSGSIKCLSVYLSNGAYGNAGISDGQDLLGHLSEVQSRLQKFASL
ALTVPNDSSANPLEILVEKLLDTLQMCYDSFPVMLSDEQSTHESMMIPLRYPETQELKSL
ELKFRRSQREKELRNYNDVLSVDLFSTPDAIEPVLFPEICRRTDQEPAPKNSNRENEASG
STKLDDGNRSSKLRFLYNGVILQPSTTFFESILRLMNKGQSDLLIDPSFWDEEHYITYRK
RNKSKEISSESSHNIQLSHVQENLQQAWLKDPFFTALLLGKLPGDLDGSDPSYDLLFMLK
LLEGLNRFSYQLLMGEQISKFAEGTLQDIDDLKVAIYPVPQHQFMSSILTNKLELQMQDS
LFEGGLIPSWCVYLIETCPFLLSFDTRWKYFCLTAHRSFMTDQVNNFPDQVNNIFDQVSG
HSDQVKCPPQTKKYRVSRSAILEGAVSMMTNHGPSSRIVEVEFEGEVGTGRGPTFEFYTA
VSHELQRAGLGMWRGDNCEDGFIHASFGLFPKPWSPSGMPGIDFSNVLQKFKLLGHLVVR
AVLDGRILDIPLSKAFYKIMLEQELDMYDIPSFDPELGKTLIEFQALVNKKKFLETSSTT
SKHTAVLSYKNVKLEDLCLDFTLPGSPEYELIPGGSQKMVTLDSLEEYVYLVVDATLKSG
IAKQIEAFKSGINEVFALKTLKMFTEEEMERILCGEQDSWALKNLEDHMEFEHGYDMSSP
SIITFLEILREFGREEQRAFIQFTTGTPQLPLGGLALLEPKLTVVRKQCDGNVDDELPSV
NTCRHFIKLPPYSSKEIMREKLKYAITEGLGSFHLS
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggccgaggaggctggggaggcggtgctggcctacgcgctggcggcgatcgcc
gacgagggcgcgggggccggggagacggcggccgcgctcgccgcgctctgcgaagtgctc
gcgctctcggggccggacctcatcctcgccatcccctccgcgcggctcgccaagcgcctc
ccgaagctcgtcgccgcctccgccgcaggggatggggacggcgacgtgccgctgctcgcc
gcgcgcgccatggccgaggcgtgcgagggcgcgccgccgtgggccgcgcgcttcgcgcag
cacggcgccgtcgaggcgctccgcgataggctgctcgccgtcgactgcatcgagctcgcc
gaggagtgcttgcgagctctggacaccatatctacagaatgccccgacgagtgcctcaaa
cggggggtagcagcagctgtgctacagttcttcgacttcttttcgacgaacaagcagaaa
gtggcactccagatcgtctcgaatatcttcaatgattacgatgaagaggatgtgccaacg
gtcatggaggctgtgcctgctctgtgcaacctcctgcagtcttctgataagacgattctt
gaatccgctatttcttgcttggcattggtcgcggctggcgcttccgaaaatgctgaacac
atgggtaagctctgtgaagcgaatgcggttgaggcaacgatgagcttgatgggtaacgag
gggtggaagaccctcagtgatgacatcttaactggcattcttgggctgcttaaaaatctt
gcgtctatctccgaaaaggctgtggagtctcttttcaagttagatttttgtgaattgttc
aagcagatggtaacttactacagttcctcgaaccgtgataacgataaggtgcagatgctt
gtggagctcatttaccagcttatgctgcctcttggtgcatctgagcaacatgctaaacta
gtcactgcaaagaagaatgtcatcatggcacaaagtacatacatgaaccagcttgccagc
attttttcccttatggtacaggttgcaaaatgtgctgcactatcatcaatttgctacaac
tgtatcgctgtcatcagcaacattgttgaattaagcacacctgatttcctgatggagtta
cagaatactgtaaatctctcaagctttcttaattttttgttggcccggaaaaattgccac
atcatattgcaagcactcaagatttcaaggatcctcctggagaaatgccaacagtttttc
ctcgagacctttaccaaggagggtgttaagcattcaattgattccatagtatcacatgaa
aaaaactcgagtcaccagtcaaaaagaaagaacaacatgaatgaaagttgcctttgcttt
gacctggagtcttcctccactggcgaggtatgtagggttgagaacaatgctgtcatgaaa
ctagcagaagatataaagaaaagcttcttctcggtgaaaggaagtaaaagatctccacat
aggcttggatttgctcttaaaagtttcagggacttttttgttaggttgaatgttcatgcc
acaacaccccccactgaaaatccagatagctgcaaacaattgactgatctttcaaggaga
ctattgtcagatgaactgccagttacttctacttttgagtttgtacagagtggatcgata
aaatgtttgtcagtttatctctcaaacggggcatacggcaatgcaggtatcagtgatgga
caggatctactggggcatcttagtgaggtgcagagtcggctgcagaaatttgcttctttg
gctctcactgtgcccaatgacagctcagctaatcctcttgagattttggtggagaagcta
ctagacaccttgcagatgtgctatgacagttttcccgtaatgctatctgatgaacagagt
acacatgagagcatgatgattccgctgagatatcctgagacccaggaactaaagtcattg
gaattaaaattccggaggtcacagagggagaaggaattgcgcaactacaatgatgttctg
agtgtcgatcttttctcaacacctgatgccattgaaccagttctatttcctgaaatttgc
agaagaactgatcaggaacctgcacccaagaattcaaatcgggagaatgaagcaagtggg
agcacaaaattagatgacggtaatagatcctcaaaactgagattcttgtacaatggcgtt
atacttcaaccatctactacattttttgagtcaatcctccgtttgatgaacaagggacaa
tcggatctcttgattgacccatctttctgggatgaagaacactatataacctatcggaag
agaaacaaaagcaaggaaatatcttcagagagttcccataatattcagctatcccacgtg
caagaaaaccttcagcaagcatggttaaaggacccttttttcactgccctacttcttggc
aaactacctggtgatctggatgggtctgatccatcatacgatctcttgttcatgctgaaa
cttcttgaagggttgaatcgtttttcgtatcaactgttgatgggtgagcagataagtaaa
tttgctgaaggaactctacaagatattgatgatcttaaggtggcaatttatccagtccca
cagcatcagttcatgagcagcattttgacgaataagctagagctgcaaatgcaagatagt
ttgtttgagggtggcctcataccctcgtggtgtgtctatctgattgagacctgcccgttc
ctattgtccttcgacacacggtggaagtatttttgcctgactgcacatcgctcattcatg
actgaccaggttaacaattttccagatcaggttaataatatttttgaccaagttagcggt
cactcagaccaggttaagtgtcctccacagactaaaaaatatagagtaagccgaagtgct
atccttgaaggcgctgtatcaatgatgaccaaccatggtccaagcagcagaatcgttgag
gtggaattcgaaggtgaggttgggactgggcgaggtccaacattcgaattctacactgca
gttagccatgaacttcaaagagccgggcttggaatgtggagaggagacaactgtgaagat
ggattcattcatgcctcttttgggctatttccaaagccgtggtcgccatcaggcatgcca
gggattgatttttctaatgtgttacagaaattcaagcttctggggcatcttgttgtgagg
gcagtcctggatggaaggatcctggacattccactttctaaagcattttacaagatcatg
cttgagcaggagctcgatatgtatgacatcccatcgtttgatccagagctgggcaagaca
ttaatagagtttcaagcacttgttaacaagaagaaatttctagaaacatcttcaacaaca
tctaaacatactgctgttctgtcctataaaaacgtgaaattggaggatttgtgccttgac
ttcactcttcctggaagtcctgaatatgaacttattcctggaggctcgcaaaagatggtg
acccttgacagtttagaggaatatgtatatttggttgttgatgcaacactgaagagcggg
attgccaagcagatagaggctttcaaatctggaattaacgaggttttcgcccttaagaca
ctcaaaatgtttactgaggaggaaatggaacgcatactatgtggtgaacaggattcttgg
gctttaaagaaccttgaggatcacatggagtttgagcatggctatgacatgagcagtccg
tcaattattactttcctggagatattgcgggagtttggaagagaggagcagcgggctttc
atacaattcactactggaacgcctcaactcccgcttggtggcctagctttgcttgaaccc
aagctcactgtcgtgcgcaagcaatgtgatggcaatgtagacgatgaattgccaagtgtc
aatacctgccggcactttatcaagctccctccttactcatcgaaggagataatgagagag
aagctcaaatatgctattacagagggtttaggctccttccacttgtcatga
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