Panicum hallii (Hall's panicgrass): 112883844
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Entry
112883844 CDS
T07366
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112883844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112883844
04121 Ubiquitin system [BR:
phai04121
]
112883844
03036 Chromosome and associated proteins [BR:
phai03036
]
112883844
03400 DNA repair and recombination proteins [BR:
phai03400
]
112883844
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
112883844
Ubiquitin system [BR:
phai04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
112883844
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
112883844
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
112883844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-C3HC4_2
zf-HC5HC2H
zf-RING_2
BRCT_2
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_4
zf-RING_UBOX
zf-RING_5
zf-RING_6
RTT107_BRCT_5
zf-HC5HC2H_2
zf-RING_10
PTCB-BRCT
zf-rbx1
PHD_NSD
zf-P11
Motif
Other DBs
NCBI-GeneID:
112883844
NCBI-ProteinID:
XP_025804873
LinkDB
All DBs
Position
3:14131549..14136394
Genome browser
AA seq
1004 aa
AA seq
DB search
MPPKSPSPRRPECQKPRTEIRNRRKETQESPRIRRRDRRTVMADVGSLEKMGRELKCPIC
LSLLSSAVSITCNHIFCNGCLTESMKSSSSCPVCKVPFRRREIRPAPHMDNLVAVFKSME
AAAGTSVVSTQLAPAPKVADESQCGGNSGSKAKRSRKKKVASKKENNTSKATAASASCPT
TKPSISTNKRIHVTPFPESETPTRPNKIMKPEEQKTKLNGDAEEDINKTLNSDRPESPSL
SPFFWLMGEEEEEGGTAGTSSEPLSLNTPLRHNAPTFSDIIDSDDEIPNDATPNSKAEVS
EMFDSEIFEWSQRPCSPELRSTPLKKQGKSKNVLDQITETDDVEDMNLGCSFDKLDHESN
ANSTQPVNFKEIKKRKLSRARSNKNSKLPNCVKLCTKGSDADNQVTNMPVSIDAKQCKKN
SSKRERNTSSGGNKVSGNSSRFLCSSDKSTETVSPQDDGLEVEAPEDQPSERSSKMDKNS
RQKLEITGDSALKTAEKTSEQRSKRFRRISDGVVADKIRVFSEAENETEPLQLQSFIKGR
SQYKSLDGRNKQSTESNIGPHTPSILPGRCLFNEAIRTVPSVKNSSAKAIEQTGYSGTIR
SCTARSAVLKKCEDKVPKISCAFCQSDDITEESGEMVHYHYGKQVPAEFSGGASVIHSHK
NCLEWAPDVYFKDDSVFNLATELARSRRIKCACCGIKGAALGCFEMSCRKSFHFTCAKLI
PECRWDNENFVMLCPLHQSSKLPIETESKKMPQRRLTPKGPSQARPCQDSGNKWTWPSGS
PQKWVLCCSALSAAEKGIVSEFAKIAGVPISTSWNPSVTHVIAKTDLSGACKRTLKFLMA
ILNGKWILSIDWVKTCMDRMEPVDEVRFEVTTDVHGVSEGPKLGRQRVINKQPKLFDGIQ
LYLHGDYSKSYRGYLQDLVVAAGGNVLQRKPVSRDQQKLVDNSSLILIVYSVENQDKVKP
KSKDGVHTGCNQADAQALACASGGRVVSSAWIIDSIAACNLQPL
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgcccccgaaatccccctctcccagacggccagagtgccagaagcccagaaccgagatc
agaaatcgccgcaaggaaacgcaagagtcgccgaggatccggaggcgggatcgaaggacc
gtgatggcggacgtggggagccttgagaagatgggccgggagctcaagtgccccatctgc
ttgagcctgctgagttcggcagtgtccatcacctgcaaccacatcttctgcaacggctgc
ctgacggagtcgatgaaatcttcgtccagctgcccggtgtgcaaggtcccattccgtcga
agagaaatacggccagcacctcacatggacaatttggtggctgttttcaaaagtatggaa
gctgcagcaggtactagtgttgtgtcaacacagctggctcctgcacccaaggttgcagat
gaatcacaatgtggtgggaacagtggtagcaaggctaaaaggtcgcggaaaaagaaggta
gcatccaagaaggaaaataatacatccaaggctactgcagcttctgcatcttgtcctact
acaaagccttcaatctccactaacaaaagaatacacgtgacaccatttcctgaatctgag
acaccaacaaggcccaataagattatgaagcctgaagagcaaaaaactaagctgaatggt
gatgctgaagaggacattaataaaacactgaattctgatagaccagaaagcccttcatta
tcaccatttttttggctgatgggagaagaggaagaagaaggtggcactgctggaacttca
agtgaaccactatcattgaacacacccttgcgtcacaatgcacctaccttcagtgatatc
atagattctgatgatgaaatacctaatgatgctactcctaatagcaaagctgaggtttca
gagatgtttgacagtgaaatctttgaatggagccaaagaccttgctcccctgagctgcga
tctactccactgaaaaaacagggtaaatcgaagaatgttctagatcaaatcacagagaca
gatgatgttgaagatatgaatcttggttgttcatttgataagttagaccatgaaagtaac
gccaattccactcagcctgtcaattttaaagaaattaagaagagaaagttgtcaagggct
aggagcaacaagaattcaaaactgcccaattgtgttaagttatgtacaaaaggatctgac
gctgataaccaagttacaaatatgcctgtaagtattgatgcaaagcaatgcaagaagaac
agcagtaaaagagagagaaatacttcaagtggaggaaacaaggtctctggcaacagcagt
agatttctttgctctagtgataaatctacagagacagtttccccacaagatgatggtttg
gaggttgaagcacctgaggaccagccttcagaaaggtcctcaaaaatggataaaaacagt
cgacaaaaacttgaaataacaggggatagtgcattgaagactgcagagaaaacatctgaa
caaagaagtaagcgtttcagaagaatttctgatggtgttgtagctgacaagataagagtt
ttttcagaggctgaaaatgaaacagaaccactgcagcttcagagtttcataaaaggccgc
agccaatataaatccttggatggcagaaataaacaaagcacagaatcaaacattggtcca
catacgccaagcattttacctgggagatgcctatttaatgaggccatacgcacagttcct
tcagtaaagaatagtagtgcaaaagccatcgaacaaacaggttactcaggaactatcaga
tcatgcactgcacgcagtgctgtcctgaagaaatgtgaggataaagttcctaagatttca
tgtgctttctgccagtctgatgatatcacagaggaatctggagagatggttcactatcat
tatgggaaacaagtgcctgcagaatttagtggaggggctagtgtaatacattcccacaaa
aactgccttgagtgggctcctgatgtctacttcaaagatgactctgtgtttaatcttgca
actgaattggctagaagtagaaggatcaaatgtgcttgctgtggaattaaaggtgctgca
cttggatgctttgagatgagttgtcgaaaaagcttccacttcacctgtgctaaattgatc
ccagaatgtagatgggataatgaaaactttgtgatgctgtgccctttgcaccaatcttca
aagttgccaatagaaactgagtcgaaaaagatgcctcagaggagactaacaccaaaaggg
ccatctcaagcaagaccctgtcaggattctggtaataaatggacatggccatctggatca
ccacagaagtgggttctctgctgttcagccctttctgctgcagaaaagggtattgtatca
gaatttgcaaaaatagctggtgtgcctatctcaactagttggaatcccagtgttactcat
gttattgcaaaaacggatctgtccggtgcttgcaagcgcacactgaagtttctgatggca
atcctgaatggcaaatggattctctctatagactgggttaaaacttgtatggatcgtatg
gaacctgttgatgaagttagatttgaagtcaccactgatgtacatggggttagtgagggt
cccaagttaggcaggcaaagagttatcaacaagcaacctaaattattcgacggcattcag
ctctacctccatggagattactccaaatcctacaggggctacctgcaggaccttgtggtt
gcagccggtggaaatgtcctacagagaaagcctgtgtcaagagaccagcagaagttggtc
gacaacagctccctcatcctcattgtctacagcgtggaaaatcaagacaaggtgaaacca
aaatccaaggatggtgtccatactggttgtaaccaagcagatgctcaggctctggcctgc
gcgtctggtggcagagttgtgagcagcgcatggataatcgactccatagcagcttgcaac
cttcaacctctttaa
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