Panicum hallii (Hall's panicgrass): 112883902
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Entry
112883902 CDS
T07366
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112883902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112883902
03036 Chromosome and associated proteins [BR:
phai03036
]
112883902
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112883902
Coactivators
SAGA/TFTC/STAGA complex
112883902
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
112883902
STAGA complex
112883902
TFTC complex
112883902
SAGA complex
112883902
SLIK complex
112883902
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
RecX_HTH3
WD40_like
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
112883902
NCBI-ProteinID:
XP_025804950
LinkDB
All DBs
Position
3:complement(10898102..10906014)
Genome browser
AA seq
661 aa
AA seq
DB search
MEDEEMEKKVQQYLQRKGFRLTELALQEERNRLSTSAVSDITLARSDNDPGRYHDGYSRL
RTWAYSSLDQYKHELLRVLYPVFIHCFMDLVAEGHMQEGICNARSFFHMFREDHEVMHSR
DLQKLEGVLSPSHLEEMELARALRQNKFKIKLCEYSYELLLQYIQKTQALVVLGVINEHI
TFEVSPGQPLLISDDADVVALIGTSKDLAKQINQKEVHWGLLEDSVEERMEKALAESDKV
EAESKDADTEDNKKRNAEGGKQGASLKKSKKDKLVGATGKNVRTETSMASVAPRVKPELT
LPTTPVEVEQSILEDLRNRAQLNSVALPSVSFYTFLNTHNGLNCSSISHDGSLVVGGFSD
SSVKVWDMSKIGQAAKTSSSQGENGSSQGERMSTIDEGKRPYTLFQGHSGPVYSAAFSPF
SDFLLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSM
ERIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQSGDCIRMFIGHRSMVLS
LAMSPDGRYMASGDEDGTIMIWDLSTGRCVSPLLGHSSCVWTLAFSCEGALLASGSADCT
VKLWDVASSTKALKTEDTKGSTANRLRLLKALPTKSTPVYSLRFSRRNLLFASGALSLNA
S
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaggagatggagaagaaagtgcagcagtacctgcagcgcaaggggttccgc
ctcaccgagcttgcgctgcaggaggagcgcaaccgcctctccacctctgccgtctccgac
atcacgcttgccagatctgacaatgatccgggaagataccatgatggatatagtagacta
agaacatgggcatatagttctcttgatcaatacaagcatgaattacttcgtgtcctttac
ccagtttttatccattgcttcatggatctagtggcagagggacatatgcaggaaggtatt
tgtaatgctcggtcatttttccatatgtttcgggaagatcatgaagtaatgcattcaagg
gatcttcagaagctggaaggcgtcctctctccttcacatctggaggaaatggaactggcc
cgagctttaaggcaaaataaatttaaaattaaattatgcgagtattcatatgaattactt
ctccagtatatccaaaaaacacaagctctagttgtgcttggggtaatcaatgagcacata
acttttgaagtatctcctggacagcccttgttaatttctgatgatgcggacgttgttgct
ctgattggaacaagtaaggacttggcaaagcagataaatcagaaggaagtgcattggggg
ttgcttgaagattctgttgaagagcgaatggagaaggcactagcagaatctgataaagtt
gaagctgaaagcaaggatgctgacacagaagataacaagaaaagaaacgcagaaggtgga
aagcaaggtgcttctcttaagaagagcaaaaaggataagcttgtaggtgcaaccggaaaa
aacgtcagaactgaaacaagcatggcttctgtggcacctcgtgtgaaaccagagctaact
ctgccaacaacgcctgttgaagttgaacaatcgattcttgaggatctgcgaaaccgtgca
caattgaatagtgtggcattaccgtctgttagcttctacacattcctcaatacacataat
ggattaaactgctcatcaatatcacacgatggatctttggttgtgggtgggttttctgat
tcgtcggtgaaggtttgggatatgtcaaagattggtcaagcagcaaaaacatctagttca
cagggggagaatggatcttcccagggtgaacgcatgtcaacaatagatgaggggaaaaga
ccttatacactattccaaggtcattctggaccagtttattcagcggcctttagcccgttt
agcgattttctcttgtcatcatcttcagattcaacaattagactttggagtaccaagctg
aacgcgaatcttgtctgttacaaaggacacaactacccagtttgggatgtccaattcagc
ccggttggccattactttgctagtgcttcacatgacaggactgctagaatctggtcaatg
gaaagaattcagcctttgcggataatggctgggcatctttccgatgttgattgtgtccag
tggcatgtaaactgtaactacatagccaccggttctagcgacaaaactgtaagactatgg
gatgttcagtcgggcgattgtatacggatgtttattggtcataggagtatggttttatca
ctggcaatgtcacctgatggacgatacatggcctctggagatgaagatggaaccatcatg
atatgggatctatctactggtcgctgtgtttcaccactactaggacacagctcttgtgtg
tggacacttgctttcagctgtgaaggggcattgcttgcatctggatcagccgactgtacc
gtaaaactatgggatgtcgcttccagcacaaaggccctgaagacggaggacaccaaaggc
agtacagctaaccgactgaggttgcttaaagctctccctacaaaatcaactcctgtttat
agcctgcggttctctcggcggaaccttctatttgcgtccggtgctctctcgctgaacgcg
tcgtaa
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