Panicum hallii (Hall's panicgrass): 112884001
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Entry
112884001 CDS
T07366
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112884001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phai03400
]
112884001
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
112884001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
DUF4106
Motif
Other DBs
NCBI-GeneID:
112884001
NCBI-ProteinID:
XP_025805067
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All DBs
Position
3:40715379..40757993
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AA seq
942 aa
AA seq
DB search
MDGDDFTPEGGKLPELKLDARQAQGFISFFKKLPQDPRAVRLFDRRDYYTAHGENATFIA
RTYYHTMSALRQLGSSSEGISSASVSKAMFETIARNILLERTDRTLELYEGSGSSWRLTK
SGTPGNISSFEDILFANNDMQDSPIIVALFPVFRESQLYVGLSFLDMTNRKLGLAEFPED
SQFTNVESALVALGCKECLLPADCEKSIDLNPLHSAIRNCNVLVTEKKKADFKSRDLAQD
LGRIIRGSVEPVRDLLSQFDYALGALGALLSYAELLADDTNYGNYTIEKYNLNCYMRLDS
AAVRALNIAEGKTDANKNFSLFGLMNRTCTVGMGKRLLNRWLKQPLLDVNEINNRLDMVQ
AIIEDPELRQGLRQQLKRISDIGRLTHSLRKKSTNLQPVVKLYQSCSRISIIKGVLQQYN
GQFSTLIRTKFLDPLEEWMTENRFGRFASLVETAIDLDQLDNGEYRISPLYSSDLAVLKD
ELSVVEDHINNLHMHTANDLDLSVDKHLKLEKGPFGHVFRISKKEEQKVRKKLTSNYIII
ETRKDGVKFTSPKLKKLGDQYQALLSEYTSCQKKVVDDVVRVSGTFSEVFENFAAVLSEL
DVLQSFADLATSCPVPYVRPDITASDEGDIILQGSRHPCLEAQDGVYFIPNDCTLVRGKS
WFQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCDQASVSVRDCIFARVGAGDCQLRGV
STFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTLFAT
HFHELTALAHRNDDEHRHVSDIGISNYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPEAVVALAKSKAAELEDFSTTPAFSDDSKDEVGSKRKRVFSPDDVTRGAARARLF
LEEMAALPIDEMDGSKTMELATKLKADLQKDAADNPWLQQFV
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggatggagacgacttcacgccggagggcggcaagctcccggagttgaagctagatgcg
aggcaagcgcagggtttcatctccttcttcaagaaactgccgcaggacccccgggccgtt
cgtctcttcgatcgcagggattattacactgctcatggtgagaatgccacgtttattgca
aggacatactaccacacaatgtcagccttgcgtcaactaggtagcagctctgagggaatc
tcaagtgccagtgtgagcaaggctatgtttgagaccattgcccgcaacattttgttggag
cggactgaccgtacattggagctctatgagggaagtgggtcgagttggaggttaacaaag
tctggaacacctggaaatattagtagttttgaagacattctgtttgcaaataatgacatg
caagattcaccaataattgttgctttgtttccagtgttccgggaaagtcagctgtatgta
gggcttagttttttggatatgaccaacaggaagcttgggttagctgagtttcctgaagat
agccaattcacaaatgttgaatcagcacttgttgcattaggttgcaaggagtgtcttctc
ccagcggattgtgagaaatccattgatttgaatccccttcacagtgccattaggaattgt
aatgttctggtgactgaaaaaaagaaggctgacttcaaatccagagatcttgcacaagat
cttggtagaataatcaggggttctgttgagccagttcgtgacctgctatctcagtttgac
tatgctcttggtgcccttggagctctgttatcttatgccgagttgctagcagatgatact
aactatggaaattacacaattgagaagtacaatttgaactgctacatgagacttgattct
gctgcggtgcgagcattaaacattgcagaagggaaaactgatgcgaacaagaacttcagt
ttgtttggtttgatgaacagaacctgtactgttgggatgggaaagagattgctgaacaga
tggctgaaacaacctctattagatgtgaatgaaatcaataacagattagatatggttcag
gctatcatagaagacccagagcttcgtcagggactcaggcaacaacttaaaaggatatca
gatattggtcgtctaacgcattcactccgcaagaaatcaactaatctacaacctgttgtt
aagctttaccagtcttgttctagaatctcaatcatcaagggtgttcttcagcaatacaat
ggccaattttccacattgataaggacaaagtttcttgacccattggaagaatggatgaca
gagaatcgatttggtaggttcgcttctcttgttgagacagctattgaccttgatcagctg
gacaatggagagtacagaatatctcccctatattcttctgacttagcagtgctgaaggat
gagctttctgttgtcgaagatcacataaataatttgcacatgcatacagctaatgatctg
gatctttctgttgataagcatctgaagctagaaaaaggaccatttggacatgtgttcaga
atctcaaagaaagaggagcagaaagtcaggaagaaactgactagcaactacataatcata
gaaactcgtaaagatggcgtgaagttcactagtccgaagctgaaaaagctaggtgatcaa
taccaggcactgcttagtgagtacacaagttgtcagaaaaaggttgttgatgatgtagtg
agggtttctggcaccttctcagaggtatttgaaaattttgctgcggttctttcagagttg
gatgttttacaaagttttgctgatttggcaactagttgcccagttccttatgtaaggcca
gacattacagcttcggatgaaggagatattattctacaaggtagcagacatccttgtctg
gaagcacaagatggtgtttactttatacccaatgattgcactctggtaagagggaaaagt
tggtttcagatcattactgggccaaacatgggaggaaaatccacatttataagacaggtc
ggtgtaaatgttttgatggcacaagttggttcctttgttccttgcgatcaagcaagtgtt
agtgtgagagattgtatttttgctcgtgttggtgctggtgattgccaacttcgtggtgta
tcaacctttatgcaagaaatgcttgaaacagcatccatcctgaaaggcgccactgacaag
tctcttattattattgacgagctgggacgtggaacttccacatatgatggatttggtctc
gcatgggctatatgtgagcatctagtggaagtgactcgagcgcctaccttgtttgcaacc
catttccatgaattaactgcattagcacatagaaatgatgatgagcaccgacatgtttct
gatattggaatttcaaattatcacgtgggtgctcacatagacccatcaagtcggaagtta
actatgctttacaaggttgaacctggggcatgcgaccaaagttttggtattcacgttgca
gaatttgctaattttccagaagctgttgttgctcttgcaaaaagcaaagcagcagagtta
gaagacttttctactacacccgcattttctgacgactcaaaagatgaggttgggtcaaag
cgcaagagggtatttagcccagatgacgtgaccagaggggctgctcgagctcggcttttc
ctggaggaaatggcagcgttgcctatagatgagatggatgggagcaagaccatggagtta
gccaccaaactgaaagctgacttgcagaaagatgcagctgacaatccttggcttcagcag
ttcgtctga
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