Panicum hallii (Hall's panicgrass): 112884038
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Entry
112884038 CDS
T07366
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03013
Nucleocytoplasmic transport
phai03015
mRNA surveillance pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112884038
09122 Translation
03013 Nucleocytoplasmic transport
112884038
03015 mRNA surveillance pathway
112884038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112884038
03041 Spliceosome [BR:
phai03041
]
112884038
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112884038
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112884038
Spliceosome [BR:
phai03041
]
Complex C
Other components
EJC/TREX
112884038
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112884038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
112884038
NCBI-ProteinID:
XP_025805130
LinkDB
All DBs
Position
3:complement(9849739..9854592)
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AA seq
429 aa
AA seq
DB search
MMGEAKENDVYEEELLDYEEDDDKTVDGSAAKPTGEVAKKGYVGIHSSGFRDFLLKPELL
RAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVAAL
VLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIRKHKDLLKNECPHIVVGTPGRIL
ALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRP
VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSV
SRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVN
IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQ
IDTSTYMPS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgatgggagaggccaaggagaacgacgtctacgaggaggagctcctggactacgaggag
gacgacgacaagaccgtcgatggctccgccgccaagcccaccggagaggtcgcgaagaag
ggctacgtcggcatccacagttccgggttcagagacttcctcctcaagccagagctgctt
cgtgctatccaggactgcggttttgagcatccatccgaagtgcaacatgagtgcatccct
caagcaattcttgggatggatgtcatatgtcaagcaaaatctgggatggggaagactgca
gtttttgtcctgtcatccctccaacagattgaccctgttgcgggtcaggtagcagcactt
gtattgtgccacacaagggaactggcctaccagatctgccacgagtttgagaggttcagc
aaatatctgcctgaagttaaagttgctgtcttctatggaggagttcacatcaggaagcat
aaagatttgctgaagaatgagtgccctcatattgtggttggcacacctggaaggatactt
gctcttgccagagagaaggatctctcactcaagaatgtgaggcatttcatccttgatgaa
tgtgacaagatgctcgagtcacttgatatgaggagagatgtccaggagatcttcaaaatg
actcctcatgataagcaagtcatgatgttttctgcaacactcagcaaggagatccgtcct
gtatgcaagaaatttatgcaagatccaatggaaatttatgttgatgatgaggcaaaattg
accctccatgggcttgttcagcactacataaaacttagcgaggcagagaagaacaggaaa
ctgaatgatctcttggatgctcttgatttcaaccaagttgtgatattcgtgaagagtgtt
agcagagctgcagaactgaataagttgctttgcgagtgcaacttcccttcaatctgcatc
cattctggaatgacccaggaagaaaggttaacccggtacaagaacttcaaggaaggccac
aagagaattcttgtggctacagatttagttggcaggggcatcgatattgagcgtgtcaac
atcgttataaactatgacatgccagactcagctgatacatatttgcacagggttggaagg
gctggtcgttttggcacaaagggacttgcaattacctttgtttcctctgcctcagattct
gatgttcttaaccaagtgcaagaaaggttcgaggtggacataaaggaactgcctgagcaa
attgacacttccacatacatgccatcgtaa
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