Panicum hallii (Hall's panicgrass): 112884605
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Entry
112884605 CDS
T07366
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog A
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03013
Nucleocytoplasmic transport
phai03015
mRNA surveillance pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112884605
09122 Translation
03013 Nucleocytoplasmic transport
112884605
03015 mRNA surveillance pathway
112884605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112884605
03041 Spliceosome [BR:
phai03041
]
112884605
03009 Ribosome biogenesis [BR:
phai03009
]
112884605
03012 Translation factors [BR:
phai03012
]
112884605
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112884605
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112884605
mRNA cycle factors
Stress granule specific factors
112884605
Spliceosome [BR:
phai03041
]
Complex C
Other components
EJC/TREX
112884605
Ribosome biogenesis [BR:
phai03009
]
Eukaryotic type
90S particles
Helicases
112884605
Translation factors [BR:
phai03012
]
Eukaryotic type
Initiation factors
eIF-4
112884605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
Utp25_C
Motif
Other DBs
NCBI-GeneID:
112884605
NCBI-ProteinID:
XP_025805831
LinkDB
All DBs
Position
1:complement(59715723..59719036)
Genome browser
AA seq
407 aa
AA seq
DB search
MAAPTTSRRGPGAARNMDDDNLTFETSPGVEVVSTFDQMGIKDDLLRGIYGYGFEKPSAI
QQRAVLPIINGRDVIAQAQSGTGKTSMISLTVCQIVDTAVREVQALILSPTRELASQTER
VMLAIGDYLNIQVHACIGGKSIGEDIRRLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLL
VLDEADEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTSKFMTEPVRILVKRD
ELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRTNNFTV
SAMHGDMPQQERDAIMTEFRSGETRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR
IGRSGRFGRKGVAINFVRKDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccgaccacctcccgccgcggccccggcgccgcccgcaacatggacgacgac
aacctcaccttcgagacctccccgggggtcgaggtcgtcagcaccttcgaccagatggga
atcaaggacgacctcctccgcggcatctacggctacggcttcgagaagccctccgccatc
cagcagcgcgccgtcctccccatcatcaacggccgtgacgtcatcgcgcaggcccagtcc
gggacgggaaagacatccatgatctccctcaccgtctgccagatcgtagacaccgccgta
cgcgaggtgcaggctttgatcctctcaccgactagggagcttgcttcacagacggagaga
gttatgctggctattggtgactacctcaacatccaagtgcacgcttgcattggtggaaaa
agtatcggcgaggatatcaggaggctggagcatggagtgcatgttgtctcaggaactcca
ggtagagtctgtgatatgatcaagagaaggaccctgcgaacaagagccatcaagcttcta
gttctggatgaagctgatgagatgttgagcagaggcttcaaggatcagatttatgatgtc
tacagatatctcccaccagaacttcaggtggttttgatatctgccacccttcctcatgag
atcctggagatgactagcaagttcatgactgaaccagttaggatccttgtgaagcgtgat
gagttgaccctggagggcatcaaacaattctttgttgctgttgagaaagaggaatggaag
tttgatactttgtgtgatctttatgatacattgaccatcacccaagctgtcattttctgc
aatactaagagaaaggtggattggcttactgaaaggatgcggaccaataacttcacggta
tcagctatgcatggcgacatgccccaacaggaaagggatgccattatgactgagttcagg
tctggcgaaactcgtgtgctaatcactacggatgtttgggctcgaggactggatgttcag
caggtttctcttgtcataaattatgatctcccaaataaccgtgagctttacatccatcgc
attggtcgttctggtcgttttgggcgcaagggtgtggcgatcaatttcgtgcgcaaggat
gacatccgtatactgagagacatagagcagtactacagcacacagattgatgagatgcca
atgaatgttgctgatcttatctga
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integrated database retrieval system
