Panicum hallii (Hall's panicgrass): 112884749
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Entry
112884749 CDS
T07366
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
phai
Panicum hallii (Hall's panicgrass)
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112884749
03036 Chromosome and associated proteins [BR:
phai03036
]
112884749
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
112884749
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
112884749
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
Spt6_S1
HTH_44
HHH_9
SH2
Tex_central_region
Tex_N
Motif
Other DBs
NCBI-GeneID:
112884749
NCBI-ProteinID:
XP_025806074
LinkDB
All DBs
Position
3:complement(14980035..14988215)
Genome browser
AA seq
1625 aa
AA seq
DB search
MGRTVLSDDEEDDIEEVDEEDPRTSRRDRDDGDEDDDEEDDEEGQDEFEKDGFIVDDEDE
EDEEGEEEEQKSDDERRKKKRKKKRESEDFMLDEDDYMLLQDNNITGISRPKPGNKFKRL
KKAGRESEMDERGLSDEDGTGKKRTGKERVEYSLFGDAQDSVPYEEDIIEDDQQVDETEE
PDDDEDEMADFIVEEDEIDGNGQVVRRKKFKKKVPRQAAGVSSSALQEAQDIFGDVDDLL
ARRKQEMEREAINSGELRGKRLEDEFEPFILAEKYMTTKDEQIKENDVPERIQLSEELTG
YPPTDTTMIEEESVWIHSQLTGDGFLSFFGNEHVNKDIDQKDIVNVLNMLHVNKFEIPFI
AMYRKEMCPSLLRDLDSNDQDNKKDAPKMRWHKLLWAVQTLDRKWLLLQKRKVALELYYE
KRFDDEKRRIDDVTRQELNRQLYNSIIEALKDAKSEKEVEDVDAKFNLHFPPGEVEEEGQ
FKRPKRKSLYSICHKAGLWEVASQFGRSAEQLGHHLTLTKIPEAGELDSGKGSPEEVAAN
FTCAMFETAQDVLRGARHMAAVEIGCEPIIRKHIRGIFMNKAVVSTSPTHEGNTIIDPYH
QLSGVKWLREKPLCKFVDAQWLLIQKAEEEKLLKVTVKLPENAKKELMSDARENYLSDCV
SKSAQLWDEQRKMILDDAFFNFLLPSMEKEARSLLTAKAKHWLHMEYGKQLWNKVTVAPW
KKKDADKKDADIDLDDESELRVMACCWGPGKPATTFVMLDSSGELVDVLYAGSISNRSQG
VAETQRKKNDQQRVLKFMTDHQPHVVCVGASNYNCRQLKDDIYEVIFRIVEDHPRDVNPQ
MENFSIVYGDESVPRLYENSRISSDQLPGQSGIVKRAVALGRYLQNPLAMIATLCGPGKE
ILSWKLHALEHFLTPDEKYDVVEQVMVDATNQIGFDVNLAASHEWHFSTLQFIAGLGPRK
ASALQKDLVREGSIFSRKELVKPLGRKVFMNASGFLRVRRSGAAAASAQIIDLLEDTRIH
PESYVLAKNLAKDVYAEDAPHEVNEMDDDEQEMAIEHVREDPRNLKRLNIDEYIKSLPEE
FRKKETLCDIMDELVCGFSDWRTLYTEPSPDEEFWMLSGETEDTISEGRIVQVTVRNIQE
NKIICTFDSGLKAIVMADNYSDEGFDPESSQLHEGDVLTGKIRNVNKNRFMVYLTCKASE
MRRRPFSRGDQDPYYHEQDLTSQTVEDKARKQKELAKKHFKPRMIVHPHFQNLTAEEAMQ
FLSDKEPGEKVIRPSSRGPSFLTLTLKIFDGVFAHKEITEGGKDHKDITSLLRLGKTLTI
DNETFEDLDEVIDRYVDPLVGHLKSMLSYRKFRKGLKNEVDELLRAEKAENPMRIVYSFG
ISHEHPGTFILSYIRSTNPHHEYVGLYPKGFRFRKRDFDNIDRLVSYFQKNIDKPPPDAG
PSMRNVAAMVPMKNSAWGSGGGAGGANDGWRGDSNNDRDRSFSGRSGGRFDSRNNSGGRG
RGRGRGRGNFGNDDNGGGWTDNIGSGGGGWGTGGSGGSSWGAGGSGGGSGGGDAAGWGGA
GGDNNSGGGGWGTAAGGTDGAGGGSGGGWGAAAGGSNDSGWGSAKKAVSAQDGGSGWGSG
SGGGW
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atgggacgcacggtgctttccgatgacgaagaagacgacatcgaggaggtcgacgaggag
gatccgcggacctcgcggagagatagggacgatggcgacgaggatgacgatgaagaggat
gacgaagaagggcaggatgaatttgagaaggatggcttcatagttgatgatgaagatgag
gaggatgaggagggagaggaagaggaacagaagagcgatgatgagaggcgaaagaagaaa
aggaagaagaaaagggaatcagaagacttcatgcttgatgaggatgactacatgttgctg
caggataataacatcactggcatcagtcggccaaagcctggaaacaagtttaaacgcttg
aagaaagctggaagggaatctgaaatggatgagcgcggtttgtcagatgaggatggaact
gggaaaaaacgtactggcaaggagagagttgagtacagtttatttggtgacgctcaagat
tctgtgccctatgaggaggacatcattgaggacgatcagcaggtagatgaaactgaggag
ccagatgatgatgaggatgaaatggcagatttcattgtggaggaagatgaaattgatggg
aatggccaagttgtaagaaggaagaaatttaaaaagaaggtaccacggcaagctgctggt
gtatcatcatctgccctgcaagaggcccaagacatatttggtgatgttgatgacttgcta
gcacgaagaaagcaagaaatggagagggaggctattaactccggtgagttgagggggaag
aggcttgaagatgagtttgagccatttattcttgcagagaagtatatgacaacaaaagat
gagcaaataaaagaaaatgatgttcctgagaggatacagctgtctgaagaattgactggc
tatcctccaacggataccacgatgatagaggaagaaagtgtatggatacacagccaacta
actggggatgggtttctgtccttttttggcaatgagcacgtgaacaaggatattgaccag
aaggatattgttaacgtcttgaacatgttgcatgtcaacaaatttgaaattccattcatt
gctatgtatcgaaaagagatgtgcccaagcctgttaagagatcttgattcaaatgaccag
gataataaaaaggatgcacccaaaatgaggtggcataaactactctgggcagttcagacc
ttagacagaaagtggctacttcttcagaagcgcaaggtcgctttagagttgtattatgaa
aagagatttgatgatgagaaacggaggatagatgatgtcacaaggcaggaactaaaccgg
caactatataattccatcattgaagcactgaaggatgctaaatctgagaaagaggtggag
gatgttgatgcaaaattcaatttacactttcctccaggtgaagttgaagaagaaggacaa
tttaaacggccaaaaaggaaatccttgtacagtatctgtcacaaggcagggttatgggag
gttgccagccaatttggacgtagtgctgagcaattaggtcaccatctgacattaacaaaa
atacctgaagcaggcgagcttgatagtgggaaaggttcgcctgaagaggttgctgcaaat
ttcacatgtgcaatgtttgaaacagcacaagatgttcttcgtggtgcgagacacatggca
gcagttgagataggttgtgagccaattataagaaagcatattcgaggcatcttcatgaat
aaagcagttgtatcaacgagtcccacacatgaaggcaatacgatcatagatccatatcat
caactatcaggtgttaagtggctgagagagaaaccactgtgcaagtttgtagatgcacag
tggctacttattcagaaagcggaggaagaaaagctcctcaaggttaccgtaaaactgccc
gaaaatgcaaagaaagaactcatgtctgatgcacgcgagaattacctaagtgattgtgtc
agtaagtctgcacaattgtgggatgagcaacggaagatgatactggatgatgccttcttt
aatttcctccttccatcaatggaaaaggaggctcgatctcttttgacagcaaaagccaaa
cattggctccatatggaatatgggaaacaattgtggaacaaggttactgttgctccttgg
aagaagaaggatgcagacaagaaggatgctgacattgatttggatgacgaatcggagttg
agagttatggcctgctgctggggtcctgggaaaccagcaaccacctttgtaatgctagac
tcatcaggagaattggttgatgttctatatgcaggttctatcagtaacaggtctcaagga
gttgctgagacgcagcggaagaagaatgaccagcagcgagttctaaagtttatgactgat
catcaaccacatgttgtatgtgtaggagcgtcaaactacaattgcagacaactcaaggat
gatatttatgaggttatttttagaattgtagaagatcatccaagggatgttaacccacaa
atggaaaattttagcatcgtctatggtgacgagtctgtgcctcgcttgtatgagaactca
cgaatatcttcggatcaacttcctggccaatcaggtattgtgaagcgtgctgtggcactt
ggacgttatcttcagaatccattggcaatgattgcaacactatgtggacctggaaaagag
atactctcttggaaactgcacgcgcttgaacacttccttactcctgatgagaaatatgat
gttgttgagcaagtaatggttgatgcaacaaatcagatagggtttgatgttaatcttgct
gctagccatgagtggcatttctcgactttacagtttattgctggtctgggtccgcgcaaa
gcttcagctttgcagaaagatctggtaagagagggatcaatttttagtcgcaaggagctt
gtaaagcctctaggcaggaaagtattcatgaatgcttctgggttcttacgtgtacggcgg
agtggtgcagctgcagccagtgctcagatcattgatctgcttgaggatacaaggatccat
cctgaatcatatgtattggcaaaaaatttggctaaggatgtctatgccgaggatgctcca
catgaagtgaatgagatggacgacgatgaacaagagatggcgattgagcatgttagagaa
gacccacgtaatcttaagcgtcttaacattgacgaatatataaagtctcttccagaggaa
ttccgtaaaaaagaaacactgtgcgacataatggatgaactggtgtgtggtttctctgac
tggaggaccctgtataccgagcctagcccagatgaggaattctggatgctttctggtgaa
actgaagataccatatctgagggaaggattgttcaagtaactgttcgtaatatacaagag
aacaaaattatctgcacctttgattctggtttgaaggccatagttatggcagacaactat
tctgatgagggatttgatccagaatcatcgcagttacacgaaggtgatgtgttaaccggc
aaaattaggaatgtgaataaaaataggttcatggtttacctaacatgcaaggctagtgaa
atgaggagaagaccattctccagaggtgatcaagacccttactatcatgaacaagacttg
acctcacagactgtagaggataaggctcggaaacaaaaggaacttgcaaagaaacatttc
aagccccggatgattgttcaccctcactttcagaacctgacagctgaggaagccatgcag
ttcttatcagataaagagcctggtgagaaggtcatccggccaagttctcggggaccatca
tttttgactcttaccttgaaaatttttgatggtgtttttgcgcacaaggagataactgaa
ggtgggaaggatcacaaagatataacaagtttgcttcgcctaggaaaaacactaacaatt
gacaatgaaacttttgaagaccttgatgaggttatagacagatatgtggacccgttggta
gggcacctgaaaagcatgctctcctaccgtaaattcaggaaagggttaaaaaatgaggtt
gatgagttgttaagagcagagaaggcagagaaccctatgagaatagtatatagctttggc
atatctcacgaacatcctggcacctttatattgtcatatattaggagtacaaatccacat
catgaatatgttgggttatacccaaagggcttcagattccggaagagagactttgacaac
atcgatcgccttgtgtcatatttccagaagaatattgataaaccaccaccagatgccgga
ccatccatgcgaaatgttgctgctatggtacctatgaaaaattcagcttggggttccggt
ggtggtgcaggtggtgcaaacgatggatggaggggagatagcaataacgacagggataga
tcattctctggaagatcaggagggaggttcgattcaaggaacaactctggtggtcgtgga
cgaggacgtgggcgtggtcgtggcaactttggcaatgatgacaatggtggaggctggaca
gataacattggcagtggcggaggtggatggggcacaggtggcagtggtggctcctcctgg
ggtgctggtggtagtggcggaggatctgggggtggggatgctgctggatggggtggagct
ggtggtgataacaacagtggtggaggtggctggggaacagcggccggtggtactgacggt
gctggtggtggaagtggagggggctggggagcagctgctggtggctctaacgactcagga
tggggcagcgctaaaaaagccgtatcagcacaggatggtgggagcggctggggctccggc
agcggcggtggctggtga
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integrated database retrieval system
