Panicum hallii (Hall's panicgrass): 112884783
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Entry
112884783 CDS
T07366
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112884783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phai04121
]
112884783
Enzymes [BR:
phai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
112884783
Ubiquitin system [BR:
phai04121
]
Ubiquitin ligases (E3)
HECT type E3
112884783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
HEAT_EZ
Arm
Adaptin_N
HEAT_2
Htt_N-HEAT_1
HEAT
Phage_RpbA
TrAA12
Motif
Other DBs
NCBI-GeneID:
112884783
NCBI-ProteinID:
XP_025806126
LinkDB
All DBs
Position
3:16049198..16058071
Genome browser
AA seq
1534 aa
AA seq
DB search
MDRCRKRDDSDPEGPGEPEPPADKRPCTAEPSTSAAAAAAGAPPPPAGARPAEHGGSDMD
TSSSGHAGDADGEADDGDGDGDGDGDGGSSCESDGDGSPRPRGARALKFHQMVEAVAAEG
AGQDALVAALTELCEALSFCAEDAGGYFPTEAAARALVRRAGGGDGAGATPDVILLSVRA
ITYLCDAMPRAADAVVRHGLLPVLCSRLLSIEYLDVAEQCLQAFEKISRRQPAQCLQAGM
ITAVLAYIDFFTASIQRVAVSAVANACKKVPADCSHFVVDSVPTLCNLLQSEDKMVVEKV
AACLISIVDSFSSSVDLLDQLCHQGIIEKVLPLIHTGGLTALSPSTCSNLIGLLAKLACS
SLVAVKSLFELNVGSTIKGILVASDLSHGMPYLPLEKQNNQVNEALKLANQLIPSAARDV
EDTQIILAKEKIITDEPRFLCQFSRDILPVLIKAVNSGANSYICYGCASIVNNICYFSKP
EMLQDLLKETNIASFLAGLLSRKDHHVLTSSLKIIEILMQKLPDAYLGFFIKEGVVYAVE
ALLTQEDSSRSTHLLDDIQQSEPQPFIRNKSTCFCYAFDAHRYEAAETRTCMIGNGSLYT
FARHVKTTYFTKEVVSSEKGLTEIVQKLKTCCAVLNETTDKSSERENLQNEEYLSTILSE
VMMELHGGETMTTFEFLESGLVKSLSNYLSNGKYFQAVENMNCSSDHFLAVVKRFQSFAR
MSFSRMGQSWSDMLLTLLVRKLQNALTSLDNFPVIMSHNFKPRSNISDIPTRHSTIIPCI
RVRFKKDEDETNLSSYDSVVNLEISSSLHTIEEFLWPKVSTDMNSQKAESPPSGPALESY
VNDGSLERDSTPQSSPPSEGLICENQNPAVEPCPKQGTSSSGQAGRNTISVSDNALQPKL
VFSLKGKELDRSVTLYQSILQDQINAGSDIILDMQFWRSVHDITFRTAANPETDRTALNP
EADSPKDSSTAMSSKNDSTTGFKWQMLPFFSSMLLGKLPCKLDRSCPLYDILFMLHILEG
LNRYSFHLASDERNHSFAQGTITNLDDLKAVVFSIPQQEFVSAKLTDKLEQQMHDPLVSR
SCCLPLWCTELMSACPFLFSFEARWKYFQLAAFGSLKNHYGHIMDAIVNSVTERGSPHSR
KKFKVDRDDILVSAAEMMKSYAKSNALLEVEYKEEVGTGLGPTMEFYTLISHEFQKSGLG
MWRGELPCEAVTNDAHVSRFVVAPKGLFPRPWSASADCASFQEVSKQFHLLGQVVAKAIK
DGRILDIPFSKAFYKLILGQELNIYDIQSFDSELAISLMEFQAIACRRKYAESNLMRDCQ
IISDLTYRGCRIEDLAIDFALPGYPDYMLSSGSSSGSLNVENLEEYVHHVVEATVKSGIA
RQMEAFKSGFNEVFPLNKLQVFSEDELDRLLCGEQDTWDFGKLVDHIKFDHGYTSSSPPV
INLLEIIQEFGSHQRRAFLQFITGSPRLPPGGLAALNPKFTVVRKHNSNDADSDLPSVMT
CANYLKLPPYSSKEKMREKLIYAITEGQGSFHLS
NT seq
4605 nt
NT seq
+upstream
nt +downstream
nt
atggatcgctgccggaagcgggacgactccgaccccgagggccccggggagcccgagccc
cccgccgataagcgcccgtgcacggcggaaccctcgacctccgcggccgcggccgccgcg
ggggctcctcctccgccggccggggcgcgccccgcggagcacggcggctcggatatggac
acctcgtcgtccggccacgccggcgacgctgatggcgaagcggatgacggggatggggac
ggcgatggggacggggacggcgggtcgtcgtgcgagtcggatggggacgggagcccgagg
ccgcgcggcgcccgggccttgaagttccatcagatggtggaggcggtggcggcggagggc
gcggggcaggacgcgctcgtggcggcgctgacggagctctgcgaggcgctctcgttctgc
gccgaggacgcgggggggtacttccccacggaggcggccgcgcgggcgctcgtgcggcgg
gccggcggcggcgacggcgcgggggccacccccgacgtgattctgctctctgtgcgcgcc
atcacgtacctctgcgacgccatgccgcgggccgccgacgccgtcgtccgccacggcctc
cttcccgtgctctgctcccggctcctctccatcgagtacctcgatgtcgctgagcagtgc
ttgcaagcatttgagaagatatcacggaggcaaccggctcagtgcttgcaggcaggcatg
atcaccgctgtgctggcatacattgacttcttcactgcaagtattcagagggttgcagtg
tcagctgtcgcaaatgcctgcaaaaaggtccctgcagattgctcccattttgttgtggat
tcggtcccaacgctgtgtaatcttctgcaatctgaggacaagatggttgtggagaaggtt
gcagcttgcttgataagcatcgtagactcttttagcagttcggttgatcttctcgaccag
ctctgccaccagggcatcatagagaaggtcctgcctttgatccacactgggggactcaca
gcccttagtccatcgacttgcagcaacctgattgggcttcttgctaagctagcctgttcg
tcacttgtggcagtaaagtctctctttgagctgaatgttggtagcacaataaaggggatt
ttggtcgcctcagacctgtcccatggcatgccatacttgcctttggaaaaacagaacaat
caggtcaatgaagctctgaaactagcaaaccagttgattccttctgcagcaagagacgtt
gaagacacccagatcatactcgcgaaagaaaagataattacggatgaaccaaggtttctg
tgtcagttctctagggatattcttcctgtcttgataaaggcggtgaactctggtgctaat
tcgtacatttgctatggctgtgcttcaatagttaacaacatttgttacttcagtaaacca
gaaatgcttcaagacttgctgaaagaaacgaacatagcaagcttcttggctggtttattg
tctagaaaggatcatcatgtgttgacctcatcactaaagataattgagattctcatgcaa
aagcttcctgatgcttacctgggattctttatcaaggaaggtgtagtctatgcagttgag
gctcttcttacacaagaggattcctcaagatccactcatttgcttgatgacatacaacaa
tcagagcctcaacctttcataagaaataaatctacatgtttctgttatgcatttgatgcc
cacagatatgaagccgctgaaacaaggacttgtatgattggaaacgggagtctttatact
tttgcaaggcatgtgaagacaacctactttactaaggaagtagtgagttctgagaagggg
ttaactgagattgtgcagaaactcaaaacttgctgcgcagttttgaatgagaccacagac
aagtcatcagaacgagaaaatcttcaaaatgaagaatacttatctaccattttaagtgag
gtgatgatggagcttcatgggggagaaacaatgacaacctttgaattccttgagagtgga
ttggtcaaatctttatcaaattacctctcaaatggcaagtacttccaggcagtggaaaat
atgaattgcagctctgaccattttttggctgtggtgaaaagatttcagtctttcgctcgg
atgtcattctcaagaatgggccaaagttggagtgatatgctcttgacactgttagtaagg
aagctgcagaatgctcttacttctcttgacaactttccagtgataatgagccacaatttc
aagccaaggagcaatatttctgatatccctacgaggcactcaacaattattccatgtatc
cgagtacgattcaagaaagacgaagatgaaactaacttgtcaagctatgatagcgttgtg
aatttggaaatatcatcttccttgcatactattgaagaatttttatggcccaaagttagt
acagatatgaacagtcagaaggctgaatcaccgcctagtggccctgctttggaaagctat
gttaacgatggttctctggaacgagattccacaccgcaatcatctcctccatcagaggga
ctgatttgcgaaaatcaaaatccagctgtagaaccatgcccaaagcaaggaacttcatct
tctggtcaagcaggaagaaacacaattagcgtcagcgataacgccttacaaccgaaattg
gtatttagcttaaaagggaaagagcttgaccgatctgttactctgtatcaatcaatcctg
caggatcagatcaatgcaggatctgacataattctggacatgcagttctggcgcagtgta
catgacataactttcagaacagctgctaacccagaaactgatagaacagctcttaatcca
gaggcagattctcctaaagattcctcaactgcaatgtcatcaaaaaatgacagtacaact
gggtttaaatggcagatgctcccgttcttttctagtatgttgcttggtaaacttccttgc
aaacttgacagatcgtgtccattgtatgacatattgtttatgttacacattttagagggt
ttaaaccggtattcctttcaccttgcttctgatgagagaaaccattcttttgcccaagga
acaataactaaccttgatgatctgaaggctgtagttttctcgattcctcagcaggaattt
gttagtgccaaattgacagataaactggagcaacaaatgcacgatcctttggtttcaagg
tcttgctgcctgcctttatggtgcaccgaattgatgtctgcatgccctttcttgttttcg
tttgaggcgagatggaagtatttccaactggcagcatttggctctttgaaaaaccattat
gggcatattatggatgcaattgttaatagtgtgacagaaagggggtctccccactcacgg
aaaaagttcaaagttgatcgtgatgatatactggtttcagctgctgaaatgatgaagtca
tatgctaagagcaatgcgctacttgaagtagaatataaagaggaagtgggtactggttta
ggtcctacaatggaattctatacattgattagtcatgaatttcagaagtctggtctgggc
atgtggagaggggagcttccttgtgaagctgttactaatgatgctcatgtttctagattt
gtggttgcccctaaaggactgttccctagaccttggtctgcttcagcagactgtgcttcc
tttcaagaagtgagcaaacaatttcacctacttggtcaggttgttgcaaaagcaattaaa
gatggcaggattctcgacattccattttctaaagcattctacaagcttatccttggacag
gagcttaatatatatgacatccagtcatttgattctgagctggcaatatcccttatggag
tttcaagccattgcttgtcggagaaaatatgcagagtcaaatttgatgagggactgccag
ataatatctgatctgacttatcgaggttgtagaatagaggatcttgctattgattttgcc
ctccctgggtatccagactatatgctctcctccggaagtagctctggcagtttgaatgtt
gagaatttggaagaatatgttcatcatgttgtcgaggcaacagttaaaagtggcattgca
agacagatggaggcttttaagtcaggatttaatgaggtatttccactaaacaaactccag
gttttctcagaggacgagctagatcgattactctgtggtgaacaagatacttgggatttt
gggaaacttgtggatcacatcaaatttgatcatggttacacttccagcagccctcctgtt
attaatctgttggaaatcatacaagagtttggatcccatcaacgcagagctttcttgcaa
tttataacgggttcacctcggctcccgccaggtggcttggccgcactaaatccaaagttc
acagttgtccgaaagcataacagcaatgatgctgacagtgacctgccgagtgtgatgact
tgtgccaactatcttaagttacctccatactcttctaaggaaaagatgagggagaaactg
atctatgcgatcacagaaggccaggggtccttccacctatcttaa
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integrated database retrieval system
