Panicum hallii (Hall's panicgrass): 112884938
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Entry
112884938 CDS
T07366
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112884938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phai03041
]
112884938
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112884938
Spliceosome [BR:
phai03041
]
Complex C
Other components
Step II factors
112884938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
AAA_16
nSTAND3
Sigma54_activ_2
GIPC1_GH2
TsaE
Flavi_DEAD
ABC_tran
PhoH
T2SSE
Motif
Other DBs
NCBI-GeneID:
112884938
NCBI-ProteinID:
XP_025806373
LinkDB
All DBs
Position
1:16963391..16968096
Genome browser
AA seq
1225 aa
AA seq
DB search
MAPAAAAGPGDDGLRKLEYLSLVSKVCSELETHIGVGDKVLAEFITELGRDSATVAEFDS
RLKEKGADFPDYFVRTLLTIIHAILPPSSSNPSSAAVAAGPAGAEASKFPGLARPDDPDH
ARNLRLELERDADAAAPAPARDDRDRRRDGRSRDRDYDRGGRDHDRDRGGRDHRDQDHDR
GGRDRDRDRGRDREYGRDRDWDHGRDRDGDQDRYRDRDRGRDRDMERDSDRDRGRSRRYE
DEEEEEDRGVGGRGREVAASNPSGEPELYQVYRGRVTRVMDTGCFVRLEDVRGGREGLVH
VSQMSSRRVTNAKEVVKRDQEVHVKVVSVKGQKLSLSMRDVDQDTGKDLLPMQRGADDAP
RVNPSGGGGGAMGPGRRLGLSGIVIMEEDEAVPTSRRPLKRMSSPERWEAKQLIASGVLD
VRDYPMFDEDGDGMMYQEEGAEEELEIELNEDEPAFLQGQSRFSIDMSPVKIFKNPEGSL
SRAAALQTALIKERREVREQEQRAMLDSIPKDLNRPWEDPMPDTGERHLAQELRGVGLSA
YDMPEWKKEAYGKALTFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSG
KTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTG
PDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLIKRRSDMRL
IVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPE
GDILLFLTGQEEIDHACQCLYERMKGLGRDVPELIILPVYSALPSEMQSKIFDPAPPGKR
KVVVATNIAEASLTIDGIYYVVDPGFAKINVYNSKQGLDSLVITPISQASAKQRAGRAGR
TGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGSTVLNMKAMGINDLLSFDFMDPPAPQA
LISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQ
TGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLR
RAQDVRKQLLTIMDRYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPV
YIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFYKGADPTKMSKRK
RQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggcgccggcggcggcggcggggcccggcgacgacggtctccgaaagctggaatacctc
tccctcgtctcaaaggtatgctccgagctcgagacacacatcggcgtcggcgacaaggtg
ctggccgagttcatcacggagctcggccgcgactccgccaccgtcgccgagttcgactcc
cggctcaaggagaagggagccgacttccccgactacttcgtccgcacgctcctcaccatc
atccacgccatcctcccgccctcctcctccaaccctagctccgccgccgtcgccgcgggc
cccgccggcgcggaggcgtccaagttccccgggctcgcccgccccgacgaccccgaccac
gcccgcaacctccgcctcgagctcgagcgggacgccgatgcggccgcccccgcccccgcc
agggacgaccgcgaccgccgccgcgacgggagaagccgtgaccgggactacgaccgcggc
ggccgtgaccatgaccgtgaccgcggcggccgtgaccaccgtgaccaggatcatgaccgc
ggcggcagggacagggacagggatcgaggccgtgaccgtgagtatggtcgtgacagggac
tgggaccatggtcgagaccgtgatggggatcaggatcggtatcgggaccgagacagggga
agggacagagacatggagagggatagtgatagagatcgggggaggagcaggaggtatgaa
gatgaggaggaagaggaggatagaggtgttgggggaagggggagggaggttgctgcttcg
aatcccagtggcgagccagagctctaccaggtttaccgagggagggtgacccgggtaatg
gacaccgggtgctttgtcaggcttgaggatgtgcgaggaggccgcgagggacttgtgcat
gtctcacagatgtcgagcaggcgggtgaccaatgcgaaggaggtggtgaagcgtgaccag
gaggtgcatgtgaaggtagtatcagtgaaggggcagaagttgagtttgtcgatgcgggat
gtggatcaggatacagggaaggacctcctgccaatgcagcgtggtgcagatgatgcgcca
agggtgaacccatcgggtggcggtggcggtgccatggggcctggcaggaggttgggtctg
tcgggcattgtgatcatggaggaggatgaggccgtgccaacatcacggcggccgctcaag
cgtatgagctctccggagagatgggaggcaaagcagctgattgcttcaggtgttctggat
gtgagggattacccaatgtttgatgaggatggggatggcatgatgtaccaggaggaaggt
gcagaggaagagcttgagatcgagcttaatgaggatgaaccagcattcttgcagggacag
agcagattttcaattgatatgtcacctgtaaagatattcaagaatcctgagggttcactg
agccgagcagcggccctgcagactgctctcataaaggagcgtcgtgaggtccgagagcag
gagcagagagccatgttggattcgatccccaaggatctgaatcgaccatgggaggaccct
atgcctgatacaggtgagcggcaccttgcacaggagctgagaggtgttggcctttcagct
tatgacatgccagaatggaagaaggaggcatatggaaaggctttaacttttgggcaaagg
tcaaagctttcaatacaagagcagaggcagtctcttcctatctacaagttgaagaaagag
cttatacaagctgtacatgacaatcaagttctggttgttattggagagacaggttctggg
aagaccacacaggtgacacaatatttggccgaggcgggttataccaccaggggtaaaatt
gggtgcactcagcctcggagggttgctgcaatgtctgttgcaaagagagtggcagaagaa
tttgggtgccggttgggagaggaagttggctatgccatccgttttgaggattgtactggg
ccagacacagtgataaaatacatgactgatggtatgcttctgcgtgagattcttgttgat
gagaacctttcccaatattctgttatcatgctcgatgaagcccatgaaaggaccatccac
acagatgtgctctttggtttgctgaaacaacttattaagcgcagatctgacatgaggctt
attgttacttcagccacccttgatgctgagaagttctcaggatatttctttaattgtaac
atcttcacaattcctggaagaacattcccagtggagatactctacacaaaacaacctgag
agcgattacttggatgcagcattgattactgttctgcagattcatttgacagagccagaa
ggagacatccttcttttcttgacaggacaagaggagatcgaccacgcctgccaatgtctg
tatgagaggatgaaggggttaggcagggatgttccagagctcataattttgcctgtgtat
agtgcccttcctagtgaaatgcaatcaaagatctttgacccagctccgcctggcaagagg
aaagttgttgtggccaccaatattgctgaagcttctttgacaatcgatggcatatactat
gttgtggatcctggttttgccaagatcaatgtgtacaattcgaaacaggggcttgactca
ttggttatcactccaatctcgcaagcatctgcgaaacagagagcagggcgtgctgggcgt
actggaccaggcaagtgttatcgtctatacactgaaagtgcctaccgtaatgaaatgtcc
cccacgaccattccagaaattcagaggatcaacttggggtctacagtacttaatatgaag
gcaatgggaataaatgacctattatcctttgattttatggatcccccagcacctcaagca
ctgatttctgccatggaacagttgtatagccttggtgctcttgatgaagagggccttcta
accaaactggggaggaaaatggcagaattcccattggacccaccactttcaaagatgcta
ctagccagtgttgaccttgggtgcagtgatgagatactgactatcatagcaatgattcaa
acagggaacatattctacaggccacgagaaaaacaggctcaagctgatcaaaaaagggct
aaatttttccagccagagggggatcatcttactctgcttgctgtatatgaggcttggaag
gcaaagaacttttctggtccctggtgtttcgagaactttgttcaatcaagatcattgagg
agagcacaggatgtgaggaagcaacttctcactatcatggacagatataaacttgatgtt
gtctctgctgggaaaaacttcacaaagataaggaaagcgattactgctggcttctttttc
catgctgcaaggaaggatccccaggagggatacagaaccttggtcgaaaaccagccagtg
tacatccaccctagcagcgctttgttccagcggcagccagactgggtcatctatcacgag
ctggtgatgacgaccaaggagtacatgagggaggtgactgtgattgatccgaaatggctg
gtcgagcttgcgccaaggttttacaagggtgcagaccccaccaagatgagcaaaaggaag
aggcaggagagaattgaacccctgtacgatagataccacgagcccaactcttggcgcctt
agcaagcgccgagcttga
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