Panicum hallii (Hall's panicgrass): 112885665
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Entry
112885665 CDS
T07366
Name
(RefSeq) SWI/SNF complex subunit SWI3C-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112885665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112885665
03036 Chromosome and associated proteins [BR:
phai03036
]
112885665
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112885665
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112885665
PBAF complex
112885665
GBAF(ncBAF) complex
112885665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
DUF4428
Motif
Other DBs
NCBI-GeneID:
112885665
NCBI-ProteinID:
XP_025807017
LinkDB
All DBs
Position
3:3024204..3030051
Genome browser
AA seq
780 aa
AA seq
DB search
MPRKASSTSDARAKWRKRKRAAASPSPSKQQADHSDDSDSAAAANGDEDAPRGAFANGGG
GTLAAGGGGDDDPVLDLRGADVLSSPAEPVSSFPAAVRRAVGRPHPSVLAIVDAERAASG
ADGAPAAPALVPVLENISHGQLQVISAMLPDHPSLSYDPDKPSTYVCTPPPLMEGCGVHK
QFYGKLHIVPRHSDWFVPTTVHRLERQVVPQYFSGKSQGQTPEKYMMLRNKVIAKYLERP
GKRLVFAECQGLVTSTPELYDLSRIVRFLESWGIINYLATGSVHRGLRMAASLIKEETTG
ELQLVSAPMKSIDGLVLFDRPKCSIRADDIASAVSTSSASVVANGDTDYVNLDEKIWERL
SETSCSFCSQPLPSLHYESQKEADIALCADCFHSARFVTGHSSLDFQRVDGMKDRSDTDG
DRWTDQETLLLLEGIEKFNDNWNHIAGHVGTKSKAQCIHHFIRLPVEDGLLENMEVPEAS
LPSRMQSNGFLHSDSNGSTSGCLRQSNQPGNQIPFINSANPVMSLVAFLASEVGPRVAAA
CASAALSVLTRDDSRMCSEGINAMGHAAHQNYGPSSSISPETVKHAAICGLSAAATKSKL
FADQEEREIQRLAATIINHQLKRLELKLKQFAEVETMLLKESERLELVRQQLAAQRVRIL
STRLPSAGGTLPGGGSTMSSNPMNQAIGVRPQMMQVSMPQSSMPAMYANNMQGHPQMAAL
LQQRQQMLSFGPRLPLSAIHPGTSSSSAPSMMFNPGMPNSAAPNHHPLLRPPSGNNSNVG
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcaaggcctcctccacctcagatgcgcgggccaagtggcggaagcggaagcgc
gccgccgccagcccttccccgtccaagcagcaggccgaccactccgacgattccgactcc
gccgcggcggcgaacggcgacgaggacgcgccccgcggcgcctttgccaacgggggcggc
ggaaccctagctgccggcggcggcggcgatgacgaccccgtgctcgacctccgcggggcg
gatgtgctttcctctcctgccgagccggtctcctccttccccgcggccgtccgccgcgcc
gtcggccggcctcacccctcggtgcttgctatcgtcgacgcggagcgcgcggcgtccggt
gccgacggtgctccggccgccccagccttggtacctgttctcgagaacatttcgcacggt
cagctccaggtgatctccgcgatgctgcccgaccacccgtccctgtcatacgaccctgac
aagccgtccacgtatgtttgcaccccgcctccactcatggagggatgtggagtgcacaag
cagttctacggcaaacttcacatcgtgcccaggcactcagattggtttgtgccaacaacg
gtgcacagattggagaggcaggttgtaccgcagtacttctctggaaaatcccaggggcaa
acaccggagaagtacatgatgttgaggaataaggtgattgcaaagtatttggagcgtcct
gggaaaagactcgtgtttgccgagtgccaggggcttgtcacaagcacacctgaattgtat
gacctgagtaggatagttaggttcttggaatcttgggggatcattaattaccttgcaaca
gggtctgtgcaccgtggcctcaggatggcagcatcactaatcaaggaagagacaacaggg
gagctgcaactggtatctgcacctatgaaatcgattgatggtttggttttgtttgatcgg
ccaaaatgcagtatccgggcagatgatatagcttctgcggtgtcaacttcatctgcttca
gttgtggcaaatggtgatactgattatgtgaatttggatgagaagatctgggagcgctta
tcagagacttcttgtagtttctgctcacaacctttgcccagcttacactacgagtcacaa
aaggaggcagacattgctctttgtgcagattgcttccacagtgcaagatttgttactggg
cattcaagcttagattttcagagagtggatgggatgaaggaccgatcagacactgatggg
gacagatggactgatcaggaaactttactgttgttggagggcatagagaagttcaatgat
aactggaatcatattgcagggcatgtcggaacaaagtcaaaagcacaatgtattcaccat
tttattcgtctcccagtggaagatggtttgttggagaacatggaagtgccagaagcatcc
ctaccatccagaatgcaaagcaatggttttttgcattcagattccaatggcagtacttca
ggttgtttacgtcaaagtaaccaacctggaaaccagattccattcattaattctgctaat
ccggtcatgtcactggttgcatttttggcctctgaagtaggaccaagggttgcagcagcc
tgtgcaagtgcagcattatcagttttgacaagagatgattccaggatgtgttcagaaggc
atcaatgccatgggtcatgctgctcatcaaaattatggaccctcatcatccatctctcct
gaaactgtcaaacatgctgccatttgtggcttgtcagcagctgcaacaaagtccaaactt
tttgcagatcaggaggagcgcgaaattcagagattagctgccaccatcataaatcatcag
ttaaagagactggagttgaagttgaagcagtttgcagaggttgagaccatgctcttgaag
gaaagtgaacgacttgagctggtgaggcagcagctggcagctcagcgtgtccgaatattg
tcaacccggttaccttccgcaggtggcactctacccggaggtggcagcaccatgtcttca
aacccaatgaatcaggccatcggcgttagaccgcagatgatgcaggtctcgatgccacag
tccagcatgccagcgatgtacgccaacaacatgcaggggcatccccagatggctgctctg
ctgcagcagcgtcaacagatgctctcatttgggcctcgcctgccgctctcagcaatccac
cctggcacatcatcctcgtccgcgcccagtatgatgttcaaccctggtatgcccaactcg
gctgctccaaatcaccacccgctgttgagaccaccctcagggaacaattcaaatgtaggt
taa
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