Panicum hallii (Hall's panicgrass): 112885722
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Entry
112885722 CDS
T07366
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112885722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112885722
04121 Ubiquitin system [BR:
phai04121
]
112885722
03036 Chromosome and associated proteins [BR:
phai03036
]
112885722
03400 DNA repair and recombination proteins [BR:
phai03400
]
112885722
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
112885722
Ubiquitin system [BR:
phai04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
112885722
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
112885722
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
112885722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
zf-HC5HC2H_2
PTCB-BRCT
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
112885722
NCBI-ProteinID:
XP_025807128
LinkDB
All DBs
Position
3:15278391..15283479
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AA seq
686 aa
AA seq
DB search
MVKTFGEMDSDIVDVLKQGQMQSQVLKQGKMQSDVLKQRQMQSDKLTRQFNSPTKPSLAG
ATKASLLKGQNKKKLIEDAKKSSPRVKRNKTGPNQLSYKESNVSAKHVLSEDIGGTTELK
RLLTPINLFEDECIFCHSFRRSQLHGSMVCYLKGRVVSIEEGNSSNAIYVHKKCLEWTPL
VWFEGDVVVNLESEIRRASRLRCRRCGLLGAALGCYDNDCDRSFHVPCAVQIDCRWDVDE
RLVLCPKHVSKTLPCDKLYTHTKEDDNSSSLHQSQCSYKEDSFTAFEEEGQQSDQLKTTR
SFLPVGPCTDKEGKLDNHHRENQQTDQLNTSNAASFPQSPYIHKEVIFDNHQRENQQTDQ
FNILNPSYLSQSQCFLKEGISTNSSRDGNQIDQLDTSNFSSLPLGKHSDEEEICMNCERD
DQRAHKPNTSILCCLPKSCHPDEEGISSVYKGEKIKAYQPDTSSFPSDQLVLLGLSLSVS
EKDSLQEFACWTNARLTKEWGENVTHVIVGKGAGTSWSRSFEALMAILLGKWVVHFEWVA
DCSSEMTRRPEASYVLSMDSIRTIDGPKKGRIRATKGTPKLFSGLRLCLSAYMDPDGRHR
VRNLIATAGGQVLRGGFLDLLLGDSGGSSVGPYFVFDGDATGGFSRSTLRKEEVEARKHA
ALRARVISHLRVLDAVAAYDAEILDR
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggtcaagacatttggagaaatggatagtgatattgttgatgtccttaagcaaggtcaa
atgcagagccaagtccttaaacaaggtaaaatgcagagcgatgtccttaagcaacgtcaa
atgcagagtgataaattgaccagacaatttaactctccaactaagcccagccttgctggg
gctacaaaggcatcgctgttgaagggtcaaaataagaaaaaattgatagaagatgcaaaa
aagtcatcccctcgtgttaagcgaaataagactggaccaaatcagctttcatataaagaa
agcaatgtatctgcaaaacatgtcctgtccgaagacattggaggtactactgaattgaag
agactgctaactccaattaacttattcgaagacgaatgcattttctgccattcatttaga
aggagccagcttcatggttcgatggtgtgttatctaaagggaagggttgtgtccattgaa
gagggcaactcatcaaatgccatctatgtccataaaaagtgcctggagtggactccacta
gtgtggtttgagggtgacgttgttgtgaacttggagtcagaaatcagacgtgcttcaaga
ctgagatgcagaagatgtggtctcctgggagcagcccttggttgttatgacaacgattgc
gataggagttttcacgttccatgtgcagttcagattgattgccgctgggatgttgatgaa
cgtcttgtgctgtgccctaaacatgtttcaaagacactaccatgtgataagctgtataca
catacaaaggaggatgacaattcttcttccttgcatcaaagccaatgttcctacaaagaa
gattctttcactgcttttgaagaggaaggccaacaatctgaccagcttaaaaccacaagg
tctttcttgcctgtgggcccatgtacagacaaggaaggaaaacttgacaatcatcatagg
gaaaatcaacaaacagatcaactcaacacttctaatgctgcatcatttcctcagagccca
tatatacacaaggaagtaatttttgacaatcatcaaagggaaaatcagcaaacagatcag
tttaacattttgaatccttcgtacttgagtcaaagccaatgttttctaaaagaagggatt
tccacaaatagctcaagagatggcaatcaaattgatcagcttgatacctcaaatttttct
tccttgccactggggaaacattcagatgaagaagaaatttgtatgaattgtgaaagggat
gatcaacgagcacataagcctaacacctcaattttgtgctgcttgcctaagagctgtcat
ccagatgaagaaggaatttctagtgtttacaaaggggaaaagataaaagcatatcagcct
gacacatcaagcttcccttctgatcagttggttttgcttggattgtctttaagtgtgtcg
gagaaggattccttgcaggagtttgcctgttggaccaacgcgaggctgacgaaagagtgg
ggcgaaaatgtgactcatgtcatcgtgggcaaaggtgctggcacctcgtggagcagatca
tttgaagccctcatggccatactgcttgggaaatgggtcgtccattttgaatgggttgcc
gactgctcctcggagatgactcgacgtccagaagcttcttatgtactcagcatggattca
atcagaacaatcgacgggccgaagaagggaagaatccgagcaaccaaagggacaccgaag
ctgttctcgggcctgcgcttgtgcctcagtgcctacatggaccctgacggcagacaccgc
gtgcgcaacctcatcgcgaccgcgggagggcaggtcctgaggggagggttcctggacctg
ctgctcggagactccggcggctcgtcggtggggccgtacttcgtcttcgacggcgacgcg
accggaggattttccaggagcacgctgcggaaggaggaggtggaggcgaggaagcacgcg
gccttgagggcgcgggtgatcagccacctgagggtgcttgacgccgtcgcggcgtacgac
gcggagatcctggatcgctga
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