Panicum hallii (Hall's panicgrass): 112885723
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Entry
112885723 CDS
T07366
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112885723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112885723
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112885723
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112885723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
112885723
NCBI-ProteinID:
XP_025807133
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All DBs
Position
3:complement(15283503..15289668)
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AA seq
625 aa
AA seq
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MSGPLNSNISGATSNLRDSTGRSFASSFSGQSGSLPGFHHSGSHNIHGNLNLTNISGSLA
PRNNSMAGIPSPGVQQPGGSISSGRFPSNNLQASISQIPHGHSGISNRGGMNVGGNPGFS
SSMNAIGGSIQGLSSNLANVGNRNSAPGLAASPVLGNLGPRMTNSGNIVGGSNIGRSISS
AGLSMPGIASRMNLSGNSGSGAINIQGSNRMSSMLQQASPQFMNLLGSSYPTPGGSLSQN
QVQAGNSSLGSSGMLHDGGSGDNAPFDINDFPQLTGRPNSAGGGQGQYGSLRKHGVSVNA
IVQQNQEFSIQNEDFPALPGYKGSSSDYAIDMHHKDHLHENVNIMQAQHYPMARSSGFNL
GSSYPPRQHQQSANSVQNAGLENIGLRPANSPSPSSNSGVYEQFMQQYHQPQTQNSLRLQ
ATSGPQSFKDQSQKSVQGTQAAPDPYSLLGLLSLIRLKEPGPTALALGIDLTSLGLNLNS
QDNLYKTFGSPWSNEPAKGEPDYQIPSCFSAEPPPPLQPLHFQKFHPLTLFYIFYSMPKD
VAQLYAANELYNKGWFYHKDYRVWLTRAPNAAPLVKTPLHERGSYICFDPNIWDTVHKDN
FVLHYEAVEKRPVLPSSAQNLRREL
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaccactgaactcaaacattagtggggccacctcaaaccttcgagattcaaca
ggaaggtcatttgcatcatctttttccggtcaatctggatcacttccgggtttccatcac
tcaggttcacacaacattcatggaaatctcaatctcacaaatatctctggatcgttagca
ccaagaaataattcaatggcaggtatcccgtcaccaggggttcaacaacctggtggtagt
atttccagtggtcgtttcccctcaaataatctccaagcttccatatctcagattcctcat
ggtcattctggaatcagcaacagaggaggtatgaatgttgggggaaatcctggatttagt
agtagcatgaatgctattggtggttcaatacaaggtttatcctcaaacttggctaatgtg
ggtaaccgcaattctgctcctgggttggcagcttctccagttttggggaatttaggccca
cgaatgacaaattctgggaatattgtgggtgggagcaatattgggagaagtataagctct
gctgggctgtctatgcctggtatagcgtctcgcatgaatttaagtggcaactctggaagt
ggggctatcaatattcaaggatccaaccgaatgagtagtatgcttcaacaagcatctcct
cagttcatgaacttgcttggaagttcttacccgacacctggagggtcattgtctcagaat
caagtacaggcaggaaacagttctttaggatcttctgggatgctgcatgatggaggctcc
ggtgacaatgccccatttgatataaatgacttccctcagctaactggacggcctaattct
gctggaggtggtcaagggcaatatgggtcactgcgaaagcatggagtaagtgtgaatgcc
atcgtgcaacaaaatcaggaattcagcattcagaacgaagattttccagctttaccagga
tataaaggtagttcctcagattatgctattgatatgcatcacaaggaccaccttcatgag
aatgtaaatattatgcaagcacaacattatcctatggctagatcatctggctttaacttg
ggaagtagctacccgccccgtcaacatcagcagagtgctaattcagttcaaaacgctggg
ctggaaaatattggattaaggcctgcaaattctccaagtccgtcatcaaattcgggagtt
tatgaacagtttatgcagcagtaccatcaaccgcagactcaaaattcacttaggttgcag
gcaacttcaggcccacaatcattcaaggatcagagccaaaaatctgttcagggaacacaa
gctgcaccagatccatatagtttacttggattgttgagtttaataagattgaaagagcct
ggaccaacagctcttgctttagggattgatttgacatcgttaggattgaatttgaactcc
caagataatctttacaagacttttggctctccatggtcaaatgagccagctaaaggagaa
cctgattatcagatcccgtcttgtttctctgctgagccaccaccaccgctacaaccatta
cattttcagaagtttcaccccttgacattgttctacatcttctacagcatgcctaaggat
gtcgcccagttgtatgctgctaatgaactatacaataaagggtggttttaccacaaagac
taccgtgtctggctcacaagagctcctaatgccgcgcctcttgtgaaaactccactacat
gaacgagggtcctacatttgttttgatccaaacatctgggatactgtccataaggacaac
ttcgttctccattatgaagcagtggagaagagacctgttcttccttcttctgcccaaaat
cttagacgagaactataa
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