Panicum hallii (Hall's panicgrass): 112885740
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Entry
112885740 CDS
T07366
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL3
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112885740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phai04121
]
112885740
Enzymes [BR:
phai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
112885740
Ubiquitin system [BR:
phai04121
]
Ubiquitin ligases (E3)
HECT type E3
112885740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
HEAT_2
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
112885740
NCBI-ProteinID:
XP_025807197
LinkDB
All DBs
Position
1:complement(258421..267221)
Genome browser
AA seq
1843 aa
AA seq
DB search
METRSSSRKRAAAAAAAASSSSSASKRSRPNTRRNSSAPVPAPIPVAAPPPAPSMEPSPS
SRRRSRAAAAADKGKDPDPASDPSPPAXDDDSDAPFPQSFTSASTALQGLLRRLGAGLDD
LLPSSSSAPSSATSAHLKRILAGLQAHGDESRQLQSLMQLCEMLSIGTEDSLAAFPVDAF
VPILVGMLGREDEPATAGASPDVMLLAARALANLVDVLPSSCSAVVHYGAIQCFCARLLT
IEYMDLAEQSLQALKKISLEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANICRKL
PSDASEFVMEAVPLLTNLLNHHDSKVLEHASVCLTRIAEAFTHYPEKLDELCNHGLVAQA
ASLISVGNSSGQASLSTSTYTGLIRLLSICASGSLLAVKTLLLLGISGTLKDILSGSGLI
SGTSVSPALTRPADQMFEIVSLADDLLPHMPARVINLPTYYHSYKSSSTKKSASIKQDGA
GSTENERSGRERLLREHPELLQQFGMDLLPTMTQVYGSSVNAPIRHKCLSIIGKLMYYSS
AETIQSLLGTTNISSFLAGILAWKDPQVLIPALQIAEIMMEKLPETFSKLFVREGVVHAV
ESLICSESSNTLPSQGPPQDKDNDSAMPSRSRRQRRRGGALPAENSSLDESNSSNLGVAC
STTNTSEVPNTSLRFAVSDHAKSFKDRYFPTDSDSSDIGVTDDLLKLRALCAKFNTAIEN
AKTKAKGKSKAISADCFDISIDVEEQLDEVISDMLAELSKVNGVSTFEFIRSGVVTALLD
YLSCGTFGKEKVSEGNLPQLRQQALRRYKSFISVALSIDHERDETPMALLVQKLQSALSS
LERFPVVLSQSSRIGIGGSRLTSGLSALAQPFKLRLSRAQGEKSLRDYSSNIVLIDPFAS
LAAVEEFLWPRVQRSEVASKPIVPSVNNSESGVPGTTAGASLTAATAHSGLRPTTRSKSS
AASSGTSKKDALNESTSTAKGKGKAIVKPNSDESRGPNTRNAAHQKSASEKDSEMKRAHG
HSSSEDEELDTSPVEIDDALMIDDDDISEDDDDDHEVLQEGSLPICSQDGVHDVKLGDAD
ESNIGSASFSQAQTSSDSIARNTSNRGPDSSEFRSASTFGSRGAMSFVAATMAGLASVGG
RSVRSTRDRRGLSLGGSMNDNNKLIFTAGGKQLSKHLTVYQAIQRQLMLDEDDEERFNGS
DLSNDGNRFWGDVFTITYQKADNQAEKGSQGGSTSLKSKSDSCRSISEVQGVSLLDSILQ
GELPCDLERTNSTYNILALLRVLEGLNQLSPRLRAQGASDDFAEGKIKTLDELYRTGAKV
PSEEFVNSKLTPKLARQMQDVLALCSGSLPSWCYQMTKACPFLFPFETRRQYFYSTAFGL
SRALNRLQQQQSDNHSSGGEREVRFGRLQRQKVRVSRNRILDSAAKVMEMFSSQRAVLEV
EYFGEVGTGLGPTLEFYTLLSHELQSAQLGLWRSTTPYDSGLQIDMNDVINLDPEDGSSG
KKLSSDLPGDGRHLIQAPLGLFPRPWPPKADASEGSRFFKVLEYFRLIGQVTAKVLQDGR
LLDLPLSTAFYKLILGQELDVFDIVSFDSEFGKTLQELRVLVERKKFLESTPGENQLEVA
DLRFHGAAIEDLCLDFTLPGYTDYILKEGEGSAIVNIYNLDEYITLLVDATVKSGVKRQV
EAFRSGFNQVFDISSLQIFSPQELDYLICGRQEIWEPESLVDNIKFDHGYTAKSPAIVNL
LEIMAEFTPDQQHAFCQFVTGAPRLPPGGLAALSPKLTIVRKHPSSAVNTSNSTGATESA
DDDLPSVMTCANYLKLPPYSTKEIMRKKLLYAILEGRGSFDLS
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atggaaacacgcagcagcagccgcaagcgcgcagcagccgccgccgccgccgcctcctcc
tcctcatcagcctccaagcgctcccgccccaacacccgccgcaactcctccgcccccgtc
cccgcccccatccccgtcgccgccccgccccctgccccctcgatggaaccctccccgtcc
tcccgccgccgttcccgcgccgccgccgccgccgacaagggcaaggaccccgaccccgcc
tccgacccctctccccccgccnccgacgatgactccgacgcccccttcccccagtccttc
acctccgccagcaccgctctccagggcctcctccgcaggctcggcgccggcctcgacgac
ctcctcccctcctcctcctccgccccctcctcggccacctccgcacacctcaagaggatc
ctcgccggcctgcaggcccacggcgacgagtcgcgccagctccagtccctcatgcagctc
tgcgagatgctctccatcggcaccgaggactcgctcgccgccttccccgtcgacgccttc
gtccccatcctcgtcggaatgctcggccgcgaggacgagcctgccaccgctggcgccagc
cccgacgtcatgctgctcgctgcccgggcccttgccaacctcgtcgacgtgctcccctcc
tcctgctccgccgtcgtgcactatggggccatacagtgtttctgtgctcgactgctaacc
attgaatacatggacctcgctgagcagtctctacaagctcttaagaagatctctctcgag
cacccaacagcgtgtttgcgagctggggcgctaatggccgtcctatcatatctcgacttc
ttctccactggggttcagagagtagcattgtctaccgccgcaaatatctgcaggaagctg
ccgtccgatgcttccgagtttgtcatggaagctgtccctttgctcacgaatctcctgaac
caccatgactccaaggtactagagcatgcttctgtttgtttgacacgcattgccgaagct
tttacccactacccagagaaacttgatgagctctgcaatcacggattggttgctcaagct
gctagcttgatatctgttggcaactcctctggccaggcatcactaagtacatccacatat
acaggcttaatccgtcttctctcaatatgtgcaagtggatcactgctggcagttaaaaca
ctacttcttctggggatcagtggcactcttaaagatatcctttctggatctggtttgatt
tctggaacatcagtctcccctgctctaacaaggcctgccgatcagatgtttgagatagtg
agccttgctgatgatttgcttccacacatgcctgcgagagtcattaatttaccaacatac
taccattcttataaaagctcttcaacaaagaaatctgcttcgatcaaacaagatggggca
ggttcaacagaaaatgaaagatctggccgtgagaggctattgcgtgagcaccctgaactt
ctacagcagtttggtatggatttgttacccacgatgacacaggtgtacggttctagtgta
aatgcaccgatacgtcacaagtgcttatccattattgggaagttaatgtactacagctct
gctgaaacaatccaatccctccttggcacaacaaacatatccagcttcctcgcaggaata
cttgcatggaaagatcctcaagtgttgattcctgctcttcagatagcagaaataatgatg
gaaaagcttccggagacattttccaagttgtttgtgagggaaggtgttgttcacgctgtg
gagtcacttatatgttcagaatcctccaatacactgccttctcagggaccaccacaggat
aaagataatgattctgccatgccgtcacgttctaggcgtcaacgcaggcgtgggggtgcc
ctgccagcagaaaacagttcattagatgaatcaaacagttccaatcttggggttgcctgc
tcaacaacaaacacttcagaagttccaaacaccagcctgcgttttgcagttagcgatcat
gcaaagtctttcaaagatagatacttcccgacggacagtgattcaagtgatattggagtt
actgacgatcttcttaaactgagagcactctgcgcgaagttcaataccgcaattgagaat
gccaaaacaaaagccaaagggaaatcaaaagctataagtgctgattgttttgacatctca
attgatgtagaagaacaattagacgaagtgatatctgatatgctcgctgagcttagcaaa
gttaatggtgtttccacatttgagttcattagaagtggagttgtcacagcgttgcttgac
tatctgtcctgtgggacatttgggaaggaaaaggtatctgaaggaaacctaccacagctt
cgtcagcaggcccttaggcgatacaagtccttcatatctgttgccctttctattgaccat
gaaagggatgaaactccgatggcattgttggttcaaaaactacaaagtgcattgtcttcg
ttggaacgtttccccgttgtcctcagccagtctagtaggattggtattggtggctcccgt
ctgacctcaggtcttagtgctctggcgcagcccttcaagttgcgcctgtcccgggctcaa
ggtgaaaaatcacttcgggattattcatcaaatatcgtgcttatcgacccatttgccagt
ctagcagctgttgaagaattcctttggcccagggttcaacgcagtgaggttgcttcgaag
cctatagttccatctgtaaataattctgaatcaggggttcctggcaccacagctggtgca
tcattaacagctgcaacggctcattccggtcttcgtccaacgacaagatcaaaatcatcc
gctgcaagtagtggtacatccaaaaaggatgctctcaatgaaagcactagtactgccaaa
ggaaaaggcaaagctattgtaaaaccaaactcagatgaatcaagaggacctaatacaagg
aatgctgcccaccaaaagtctgcttcagagaaggattcagaaatgaagcgagcgcatggt
cacagtagctctgaggatgaagagcttgatacatctcctgttgagattgatgatgcttta
atgatcgatgatgatgacatttcagaggatgacgatgatgatcatgaggttctccaagaa
gggtctcttcctatctgttctcaagatggcgtgcatgatgtgaaattgggtgatgctgat
gagtctaacattggctcagccagttttagccaggcgcagacatcatctgattccattgct
agaaacacatctaacaggggaccagattcttctgaatttcgaagtgcaagcacatttggt
tcacgaggtgcaatgtcatttgttgctgcaacaatggctgggctggcttctgtcggtggt
cgcagtgttagaagtacccgagatcggcgtggtctgtcacttggaggtagcatgaatgat
aacaataaactcatattcactgctggtgggaagcagctcagcaaacatttgacggtgtat
caagctatccaacgtcaattgatgcttgatgaggatgatgaagaaaggttcaatggatct
gatttatcaaacgatggaaaccgcttctggggtgatgtgttcacaataacataccagaag
gctgataaccaagctgagaagggatcccaagggggttccacctcattaaaatcaaaatca
gattcttgcaggtctatctctgaagtgcagggagtttctcttcttgatagcatcttacaa
ggagaacttccttgtgatcttgagagaacaaactcaacatacaacattttagcactatta
cgtgtactggaggggcttaatcagttatcccctcgtttaagagcacaaggagcatctgat
gattttgctgagggaaaaatcaaaaccctggatgagctatatagaactggagccaaggta
ccctctgaggagtttgtcaatagtaagttgacaccaaagcttgctcggcaaatgcaggat
gttcttgcactctgtagtggcagtttaccttcttggtgttatcaaatgaccaaggcttgc
ccatttctgtttccttttgagacaaggaggcagtacttctactccacagcctttgggttg
tcacgagcattgaatcgacttcagcaacagcagagtgacaatcacagctctggtggtgaa
agagaggtccggtttggcaggttacagcgccagaaagttcgtgtttcccgtaatcgtatt
ctggattctgctgctaaagttatggagatgttctccagtcagagggctgttcttgaggtg
gaatactttggtgaagttggaactgggctggggcctactttggagttttatactctctta
agtcatgagctacaaagtgctcagctggggctatggagatccactactccatatgattca
ggattgcaaattgatatgaatgatgtgattaatttagaccctgaagatggctcgtcagga
aaaaaactgagctcagatttaccaggtgatggcagacatttgatacaagctcctctcggg
ttgtttcctcggccttggccacctaaagctgatgcttcagaaggtagcagatttttcaaa
gttttggagtatttccgcttaattggtcaagtgacagcaaaagtcttgcaagatggcaga
cttttagatttgcctttatcaacagcattttataagcttatacttgggcaggagcttgat
gtgtttgacatagtctcatttgattctgagtttgggaagacattgcaagaactgcgagtt
cttgttgaacgaaagaagttccttgagtccactcctggcgagaatcagctggaagttgca
gacttgcgtttccatggtgctgctattgaagatttgtgtttagattttactcttccgggt
tatactgattatattctgaaagagggtgaaggaagcgcaattgttaacatttacaacttg
gacgagtatattactttgctagtggatgctacagttaagtcaggggtaaagcgacaggtt
gaggcatttagatcagggtttaatcaggtgtttgacatctcatccctccaaatattttca
cctcaagaacttgactatctaatatgtggccgacaagaaatttgggagccggaatccctg
gtggataacataaaatttgatcatgggtatactgctaaaagtcctgcaattgtgaatcta
ctcgagataatggcggaattcacccctgatcagcagcatgcattctgccagtttgtaact
ggtgctcctcgccttccacccggtggtttggcagcccttagtcccaagcttactattgtt
aggaagcacccttcaagtgcggtaaatacttcaaattcaactggggcgacagagtccgca
gatgatgatttgcctagtgtgatgacgtgcgctaattatctgaagttgcccccctactcc
acaaaagaaatcatgcgcaagaagctgctttatgcaatcctggaaggccgaggatcattt
gatctttcataa
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integrated database retrieval system
