KEGG   Panicum hallii (Hall's panicgrass): 112886260
Entry
112886260         CDS       T07366                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
phai  Panicum hallii (Hall's panicgrass)
Pathway
phai03018  RNA degradation
phai03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:phai00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112886260
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112886260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phai03019]
    112886260
   03041 Spliceosome [BR:phai03041]
    112886260
Messenger RNA biogenesis [BR:phai03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     112886260
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     112886260
Spliceosome [BR:phai03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    112886260
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 112886260
NCBI-ProteinID: XP_025807883
LinkDB
Position
3:complement(9796924..9799390)
AA seq 99 aa
MASGGPALESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVL
GLYIIRGDNISVVGEVDEDLDARLDLSKLRAHPLKPVIH
NT seq 300 nt   +upstreamnt  +downstreamnt
atggcgtccggcggcccggcgctcgagtcgctcgtcgaccaggtcatatccgtcatcacc
aacgatggccgcaacattgtgggcacgctcagaggatttgaccaggccaccaacattatc
ctcgacgagtcccacgagagggtctattctacgaaggagggagtccaacaacttgttctc
ggtttgtacattatcagaggagacaacataagcgttgtgggtgaggtggatgaagacctg
gatgcaaggttggatctgtcgaagctaagagcgcacccgctgaagccggtcatccactga

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