Panicum hallii (Hall's panicgrass): 112886260
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Entry
112886260 CDS
T07366
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112886260
09123 Folding, sorting and degradation
03018 RNA degradation
112886260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112886260
03041 Spliceosome [BR:
phai03041
]
112886260
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112886260
mRNA degradation factors
5'-3' decay
Lsm complex
112886260
Spliceosome [BR:
phai03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
112886260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
112886260
NCBI-ProteinID:
XP_025807883
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Position
3:complement(9796924..9799390)
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AA seq
99 aa
AA seq
DB search
MASGGPALESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVL
GLYIIRGDNISVVGEVDEDLDARLDLSKLRAHPLKPVIH
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccggcggcccggcgctcgagtcgctcgtcgaccaggtcatatccgtcatcacc
aacgatggccgcaacattgtgggcacgctcagaggatttgaccaggccaccaacattatc
ctcgacgagtcccacgagagggtctattctacgaaggagggagtccaacaacttgttctc
ggtttgtacattatcagaggagacaacataagcgttgtgggtgaggtggatgaagacctg
gatgcaaggttggatctgtcgaagctaagagcgcacccgctgaagccggtcatccactga
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