Panicum hallii (Hall's panicgrass): 112886321
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Entry
112886321 CDS
T07366
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112886321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phai03041
]
112886321
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112886321
Spliceosome [BR:
phai03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112886321
Complex C
U4/U6.U5 tri-SnRNP related factors
112886321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
SRP54
T2SSE
AAA_16
nSTAND3
PhoH
PWI
ATPase
Motif
Other DBs
NCBI-GeneID:
112886321
NCBI-ProteinID:
XP_025807973
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All DBs
Position
3:20180055..20183460
Genome browser
AA seq
1078 aa
AA seq
DB search
MAAEGGAEGQLKTWVSDRLMALLGYSQGIVVRLVLRLARECASAGGLTARLVDLGGFPSS
PDTAAFAADVLGRLPPRHGRGAGGGEHRRQVRDAAALARRQGEFKLLEDGDEEEEEEEGG
LAASSCASGSGKRFRNKGVDHPRGDDEEAAALSDPGRNVRRRRPESDEDTGEPDEEEEMR
RDQGGRLQLERNIRARDEASTRKLMGRKPSRREQEERARRSEAMGRGGDTPELRRASRGA
YLELRSKKKVEELRDEIIDEERMFGDVRRLDAEERELKRKKEIFGLVHGRASQDDGAGDY
YRMPDAYDDAANVDQGKRFSVARRRHDDDGKARGSKGKAFSEQESWEDQQIRKSQLEFGA
KDRGRAGDEYEFVFDDAVEFVKAAAMAGSELEDETDELGDEIDAKAMLQRELQDQRKTLP
VYKFKDELLKAIAEHQIIIVVGETGSGKTTQIPQYLHEAGYTANGRKIACTQPRRVAAMS
VAARVAQEMGVKLGHEVGYSIRFEDCTSEKTAVKYMTDGMLLREFLGEPDLASYGVVIVD
EAHERSISTDILLGLVKDVARFRPDLKLLISSATLNAEKFSDFFDMAPVFKIPGRRYNVD
IHYTVAPEADYVDAAVATVLQLHVTQPPGDILLFLTGQEEIETVEEILRRRTRGLGTKIA
ELVICPIYANLPTELQTKIFEPAPPGARKVVLATNIAETSLTIDGISYVVDPGFCKVKSY
SPRTGTEVLLVQPISKASADQRAGRSGRTGPGKCFRLFTEHSYKEDMTDETVPEIQRSNL
ASVVLSLKALGINDLVSFDFVDPPASEGLLRALEDLFALGALNSRGELTKTGRRMAELPL
DPMLAKAIVASERYGCSEEVLTIASMLSAGNAVFYRPKDRALIADAARQHFNAGSAGDHV
ALLNVYTEWERSGHSAQWCADHFVQPRTMRRARDVREQLEALLERVEIERRSCSGGDLDA
VRKAITAGFFRNTAQRRRDGLYRTLKTWRTVFVHPSSGMARLDPPPRWVVYHELVETSNE
YMRQVTELKPEWLLEVAPHYYQENNLDAPEPKKAKAHEQGAAVALEKPSPSLNDFFDV
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggagggcggcgccgaggggcagctcaagacgtgggtctcggaccggctgatg
gcgctgctgggttactcccagggcatcgtcgtgcgcctcgtgctccggctcgcgcgggag
tgcgcctccgcggggggcctcacggcgcggctggtcgacctcggcgggttcccgtcctcc
cccgacaccgccgcattcgccgcggacgtcctcggcaggctgccgccgcgccacgggcgg
ggcgcggggggcggcgagcaccggaggcaggtgcgggacgcggcggcgctggcgaggagg
cagggcgaattcaagctgctcgaagatggggacgaggaggaggaggaggaggagggtggc
ctcgccgcgtcgtcctgtgccagcggcagcgggaagcgtttcaggaacaagggcgtggac
catccccgcggggacgacgaggaggcggccgcactgtccgatcctggacggaacgtgcgg
cggcggcgcccggagtcggacgaggacaccggcgagcctgatgaggaggaagagatgagg
cgcgatcagggtggcaggctccagctcgaacggaacatccgggcgcgcgacgaggcgagc
acgaggaaactgatgggtcggaagccgtccaggcgcgagcaggaggagcgagctcgccga
tccgaggcgatgggcaggggcggcgacaccccggagctcaggcgggcctcccgtggcgcg
tacctggagctgcgcagcaagaagaaggtggaggagctgcgggacgagatcatcgacgag
gagcgcatgttcggcgacgtccgccggttggacgccgaggagagggagttgaagcggaag
aaggaaatcttcggccttgtccacggccgcgccagtcaagacgacggcgccggcgactac
tacaggatgcccgacgcctacgacgacgccgcgaacgtggaccaggggaagaggttctcg
gtggcaagacggcggcacgacgatgacggcaaagcgagaggcagcaaggggaaggctttc
tcggagcaggagtcctgggaagaccagcagatcaggaagtctcagctggagtttggagcc
aaggatcgcggccgcgccggtgatgaatatgagttcgtgtttgacgacgccgtcgagttc
gtcaaggccgccgcgatggctggaagcgagctggaggacgagacggacgaactgggcgac
gaaattgatgccaaggccatgctgcagagggagctccaagaccagaggaagacgctcccg
gtgtacaagttcaaggacgagctcctcaaggccattgccgagcatcagattatcattgtg
gtcggagagaccggctccgggaagacgacgcagataccgcagtatcttcacgaggccggg
tacaccgcaaatgggcgcaagatcgcgtgcactcagccacgccgcgtggccgcgatgagc
gtggcggcgagggtcgcgcaggagatgggcgtcaagctcggccacgaggtgggttactcc
atccggttcgaggactgcacgtcggagaagacggcggtcaagtacatgaccgacgggatg
ctcctgcgcgagttcctcggcgagccggacctggccagctacggcgtcgtgatcgtggac
gaggcgcacgagcgctccatctccaccgacatccttctcggcctcgtcaaggacgtcgcc
cgcttccggccggacctgaagctgctcatctccagcgcgacgctcaacgcggagaagttc
agcgacttcttcgacatggcgccggtgttcaagatccccgggaggcggtacaacgtggac
atccactacacggtcgcgccggaggccgactacgtcgacgcggccgtggccacggtgctg
cagctgcacgtcacgcagccccccggtgacatcctgctgttcctcacggggcaggaagag
atcgagacggtggaggagatcctccggcgccggaccaggggactgggcaccaagatcgcg
gagctggtgatctgccccatctacgcgaacctgccgaccgagctccaaaccaagatcttc
gagccggcgccgccgggcgcgcggaaggtggtgctcgccaccaacatcgccgagacgtcg
ctgaccatcgacgggatcagctacgtggtcgacccggggttctgcaaggtgaagtcgtac
agcccgcgcacgggcaccgaggtgctgctcgtccagcctatctccaaggcgtcggccgac
cagcgcgccggccgatcggggcgcactggcccgggtaagtgcttccgcctcttcacggag
cacagctacaaggaggacatgacggacgagacggttcccgagatccagcggagcaacctg
gccagcgtggtgctctcgctcaaggcgctggggatcaacgacctggtcagcttcgacttc
gtggacccgccggcgtcggaggggctgctcagggcgctcgaggacctcttcgccctcggc
gcgctcaacagccgcggcgagctgaccaagaccgggcggcgaatggcggagctcccgctc
gacccgatgctggccaaggcgatcgtggcgtcggagcggtacgggtgctccgaggaggtg
ctcaccatcgcgtccatgctgtcggccgggaacgccgtcttctaccggcccaaggacagg
gcgctcatcgccgacgccgcgcggcagcacttcaacgcgggcagcgccggcgaccacgtc
gcgctgctcaacgtgtacaccgagtgggagcggtccgggcactcggcgcagtggtgcgcc
gaccacttcgtgcagccgcgcaccatgcgacgcgcgcgggacgtgcgggagcagctggag
gcgctgctggagcgggtggagatcgagcgccggtcctgctccggcggcgacctcgacgcg
gtcaggaaggccatcacggcggggttcttccgcaacaccgcgcagcggcggagggacggg
ctctaccggacgctcaagacctggcggacggtgttcgtgcacccgagctccgggatggcg
cggctggacccgccgccgcgttgggtggtgtaccacgagctggtggagacgtccaacgag
tacatgcggcaggtgacggagctcaagccggagtggctgctggaggtcgcgccacactac
taccaggaaaacaacctcgacgcgcctgagccgaagaaggccaaagcgcacgagcagggt
gccgcagtagcactggagaaaccgagtccgagcctgaacgactttttcgacgtgtag
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