KEGG   Panicum hallii (Hall's panicgrass): 112886825
Entry
112886825         CDS       T07366                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
phai  Panicum hallii (Hall's panicgrass)
Pathway
phai03030  DNA replication
phai03410  Base excision repair
phai03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:phai00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    112886825
   03410 Base excision repair
    112886825
   03420 Nucleotide excision repair
    112886825
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:phai03032]
    112886825
   03400 DNA repair and recombination proteins [BR:phai03400]
    112886825
Enzymes [BR:phai01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     112886825
DNA replication proteins [BR:phai03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    112886825
DNA repair and recombination proteins [BR:phai03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      112886825
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf_DPOE_2 zf-DPOE DNA_pol_B_exo2 RNase_H_2 bHLH_INO2
Other DBs
NCBI-GeneID: 112886825
NCBI-ProteinID: XP_025808614
LinkDB
Position
1:44415820..44439827
AA seq 2210 aa
MSGRRRPAAGGGGGGGGGGGGNWRRSGSAAAKEQRLRLGAEELLESRLGFAPYTDGERRL
GWLLTFSPSSWEDEDTGKIYSCVDLYFVSQDGSTFKVKYKFRPYFYAGTKDKMELEVEAY
IRRRYEGEISDIEIVEKEDLDLKNHLSGLKRKYLKLQFDTVQQLMRVRNDLLHVVEKNEE
KLDAVEAFETIHGVKRVERPQDYMNYIIDLREYDVPYHVRFAIDNDVRCGQWYNVSVSGS
DVLLQRREDLLQRAEVHVCAFDIETTKLPLKFPDAEYDTVMMISYMIDGQGYLIINRECV
GEDIEDLEYTPKPEFEGHFRVKNVSTELDLLKAWFAHMQEVKPGIYVTYNGDFFDWPFLE
KRAAHHGIKMNEEIGFQCDNNQGECRAKFSCHLDCFAWVKRDSYLPQGSQGLKAVTKAKL
GYDPLEVNPEDMVRFAMEQPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEV
LRKGSGTLCEMLLMVQAFKANVICPNKHQADLEKFYNNRLLESETYIGGHVECLETGVFR
SDLPTKFQLEPSAYEQLIGNLDRDLQYAISVEGKLDIGSVTNYDEVKDAINQKLVSLRDH
PIREERPLIYHLDVAAMYPNIILTNRLQPPSIVTDVDCTACDFNRPGKNCLRNLEWVWRG
ETYMAKKNDYYHIKRQIESELIQSGGIASSKPFLDLSKPEHLLKLKDRLKKYCQKAHKRV
VDKPITEVREAGICMRENSFYVDTVRSFRDRRYEYKGLNKTWKGKLAEAKASGNSMKIQE
AQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKI
GRPLELDTDGIWCVLPGSFPENFTFKTKAGKKLTISYPCVMLNVDVARNNTNDQYQTLKD
PVNKLYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNEDGTLAELKGFEIKR
RGELKLIKVFQAEVFDKFLHGSTLEECYSAVASVANRWLDLLDNQGIDIADSELLDFISE
SSTMSKSLVDYGEQKSCAVTTAKRLAEFLGDSMVKDKGLHCQYIVAREPQGTPVSERAVP
VAIFETDPEIAKHYLRKWCRVSSDASIRSIVDWSYYKQRLSSAIQKIITIPAAMQKISNP
VPRVLHPDWLHKKVREKDDRFRQRKLRDIFSPLAKDEGMQNLNGAGDMEDLLMSNKDLRK
NSSHGLDIDKENNPNGASVGAGSNNSKKQQNSVTGLNVPLSSQIQNVAADETTDRSTDYQ
GWLDAKKRKWKHVREQKKRRRLGAAATFDGPTNALLSSRNVSQLPGNSRNRATFFQKQEL
ALFRSHWQIIQLASSTTAGRFFAWVVAEGIMFKIPINVPRVFYLNSKAPVTEEFPGRRVK
KILPHGRPCFNLIEVVTTEEQFRAEGKKLAAHLAEPDVEGIYETKIPPELNAVIQIGCVC
KVDKSAKKRSIQDGWDLAELQMKTTAECSYLEQTVSFFYLYHSLSEGRAVYVFYFPTSFR
ILAVVVNPFRNTEISPSFLEKQFRDACQALGSVPENLTFHVDYQTSIDAGTKYVQRMLLE
YRQQHPGPVIGIIECPKLQAIKAAVRALDDFPCVTIPSNARDNNYQALGWQATAGRTSMQ
RCAASTQWFNERISLARYAHVPLGNFELDWLLYTADVFFSRALRDQQQVLWISDDGIPDL
GGTYEGDTCFADEVIQPALTYPGAYRRVSVELKIHHLAVNSLLKSSQLDEMEGGSISSFG
NDMPPGPHATESDFDDASLCLPAFQVLKQLIQRCISDAVSSGNVFADAILQHLYRWLCSP
RSKLHDPALHRLLHNVMKKVFALLLAEFRKLGANVIFANFSKIIIDTGKVDLASAHAYCD
SLLKTLQTRDLFEWIELEPLHFWHSLLFMDQYNYGGIQAKTQNVDSSDGDNDIDIVSSWN
IAEYLPKDTQDHFVLIVSEFLYIPWKFMKEQVATQATIRDDTSCTPSITVMAAENLEGQV
IEHLRDKISTYFADKLLRTVSDILHHFKGKSKSESDEPASRESDPHTHKGDAALEFIKHI
CAVLALDQNVQHDILRMRKNLLKLVRVKEFAPEAQFQDPCASFTLPNVICSYCNDCRDLD
LCRDSTLQGQEWRCAVPQCGQPYHREQMENALLQVVRQRERLYHLQDLVCLRCRQVKAAH
LSDQCSCGGSFRCKEESSYFLSKMQVFRDVAVSQKFQLLQDCVEWILEVR
NT seq 6633 nt   +upstreamnt  +downstreamnt
atgagtggccggcgccggccggcggctggaggaggcgggggagggggaggcggcggcggc
gggaactggcggaggagcggctcggcggcggcgaaggagcagcggctgcgtctcggcgcg
gaggagctcctcgagagccggctgggattcgcgccctacaccgacggggagcggcgcctg
gggtggcttctcaccttctcgccatcatcatgggaagatgaggacactgggaaaatctac
agctgtgttgacctatactttgtgtcacaggatggttctacttttaaagtgaaatacaag
tttaggccttatttttatgctgggactaaggacaagatggagttggaagtcgaggcttat
atcaggcgacgttacgaaggagagatttctgacatagaaatagttgagaaagaggattta
gatctgaaaaatcacctttctggcttgaagagaaaatacctgaagcttcagtttgatact
gtacagcagctaatgcgtgtaagaaatgacctattgcatgttgttgaaaagaatgaagaa
aaattagatgctgtggaggcatttgaaacaattcatggtgtaaaaagggtagaaaggcca
caagattacatgaattacatcattgatttacgtgaatatgatgttccgtatcatgttcgt
tttgctatagataatgatgtgagatgtggacaatggtataatgttagcgtatctggttct
gatgttttacttcagagaagggaagacctgcttcagcgtgcagaagtgcatgtatgtgcg
tttgatattgagaccacaaagctgccactgaagtttccggatgctgaatacgacactgta
atgatgatttcatacatgattgatgggcaaggttacctgataattaacagagagtgcgtt
ggggaagacattgaagatttggagtacacacctaaaccagaatttgaggggcattttaga
gttaagaatgtttcaactgagttggatctgcttaaagcatggtttgctcatatgcaagag
gttaaacctggcatttatgtcacatacaatggtgacttttttgactggccatttttagag
aagagggctgctcaccatgggataaaaatgaatgaggagattggtttccaatgtgacaat
aatcagggggagtgccgggctaagttttcttgccatcttgactgttttgcttgggtgaag
cgagacagttaccttccacaaggaagccaaggtctaaaggctgttacaaaagccaagcta
ggttatgatcctctggaggttaatccagaagatatggttcgctttgcaatggagcagcca
cagacaatggcttcttattccgtatcagatgctgttgcgacatactacctatacatgact
tatgtccatcctttcatcttttctcttgcaaccataatacctatgtcacctgatgaggta
ttgcggaaaggaagtgggacactttgtgaaatgctgctaatggtccaggcattcaaggct
aatgtcatttgtcctaacaagcaccaagctgatctcgaaaaattctacaacaaccgttta
ttagaaagtgaaacctatattggtggtcatgttgagtgtcttgaaactggtgtatttaga
tctgatcttcccacaaagttccaacttgaaccatcagcatatgagcaactcattggaaat
cttgatcgtgatctgcaatatgccatttctgtagaaggaaaattggatattggttctgtc
acaaattatgatgaagtcaaggatgccataaatcaaaagcttgtttcattgcgagatcac
ccaattcgtgaagagcgccctcttatctatcatcttgatgttgctgcaatgtatccaaat
atcattttaacaaatagactccagccaccatctatagttacagatgtggactgcacagca
tgtgatttcaatcgtcctggcaaaaattgcctcagaaatcttgaatgggtctggcgagga
gagacctacatggcaaaaaagaatgactattatcacataaagaggcaaattgagtcagag
ctgattcaatctggtggtatcgcatcatcaaagccttttcttgacctctcaaaacctgaa
catttacttaaactaaaggatcgtttaaagaaatactgccaaaaggcgcacaaaagagta
gttgataaaccaattacagaagtcagagaagctggaatatgcatgcgtgaaaattcattc
tatgtagacacagtacgaagctttcgtgatagaagatatgaatacaaaggtcttaacaaa
acatggaaaggaaaattggcagaagctaaagccagtggaaattctatgaaaattcaggaa
gcacaggacatggttgttttatatgattctttgcaacttgctcacaagtgcatattgaat
tctttttatggatatgtcatgcgcaagggagcaagatggtactctatggaaatggctggg
gtagttacatatactggtgcgaagattatccaaaatgctcggttacttgtagaaaaaatt
ggaaggccactggaactggatacagatggcatttggtgtgttttgcctggttcttttcca
gagaactttacttttaagacaaaagctgggaagaagctaacaatatcttatccctgtgtc
atgcttaatgttgatgttgcgagaaataacactaatgatcaatatcaaacgctgaaagac
ccagtaaataagctatatacaacacacagtgagtgttccattgaatttgaggtcgatgga
ccttacaaggccatgatcctacctgcctctaaagaggaagggattctgataaagaagagg
tatgctgtcttcaatgaagatggcaccttggctgaacttaaaggttttgagattaagcgt
agaggtgagctgaagctcattaaagtttttcaggctgaggtatttgacaagtttctccac
ggctcaacgttggaggaatgctattctgctgttgcctctgttgctaaccggtggttggat
ctactggataatcagggaattgatattgctgacagtgagttgctcgatttcatatcggag
tcaagcacaatgagtaaatctttagttgactatggggagcagaaatcatgtgctgtaact
acagcaaaaagacttgctgaatttcttggagattcaatggttaaagacaaaggactacat
tgccaatatatcgtcgctcgggagccacaaggcactccagtgagcgagcgtgctgttcca
gtagctatatttgagacagatcctgagattgcgaagcattatttaaggaaatggtgcaga
gtctcctctgatgcaagcattcgatctattgttgattggtcctattacaagcagcgccta
agttcagctattcagaaaatcataacaattcctgcagcaatgcaaaagatctcaaatcct
gttcctcgagttcttcatcctgattggttacacaaaaaggtcagggagaaagatgatcga
tttcggcagcgtaaactacgtgatatcttcagtcccttggctaaagatgagggcatgcag
aacttgaatggggctggagatatggaagatttattaatgtcaaacaaggatttgagaaaa
aattcttcccatggtttggacattgacaaagaaaataatccaaatggggcatcagtggga
gctggttcaaataatagcaaaaaacaacaaaattctgtaactgggttgaatgttccactc
tcttcacaaatccaaaatgtggctgctgatgaaacaactgataggagtactgattatcaa
ggatggcttgatgctaagaagagaaaatggaaacatgtccgtgaacaaaaaaaacgtcgg
aggctgggtgctgctgccacttttgatggtcctaccaatgctttgctttcttcaagaaat
gtcagtcagttacctggcaacagtcggaatcgagctacatttttccagaaacaagaattg
gccctctttagatcacattggcagataatccagcttgcttcaagtacaacagctggccgc
ttttttgcgtgggttgtggctgaggggatcatgttcaagattcctatcaacgtgcctaga
gttttttatctgaactcaaaggctcctgtcacagaagagtttccaggaaggcgtgtgaag
aagattcttccacatggacgaccttgtttcaatctcattgaggttgtaactactgaagaa
cagttcagggctgaaggcaaaaaacttgctgctcatctagcagagccagatgttgaggga
atatatgagacaaaaattccaccggagctcaatgctgttatccaaattggctgtgtatgt
aaagtggacaaatctgcgaaaaaacgaagtatacaagatggatgggatcttgctgagttg
cagatgaaaacaaccgcagagtgctcatacctggagcaaacagtttcatttttctattta
taccacagcttgtctgaaggaagggctgtatatgtattttacttccctacatctttcaga
atacttgcagtggttgtcaatcctttccggaatactgaaatatctccgtcatttcttgaa
aaacaatttcgagatgcttgccaagcccttggttctgttcctgagaatctcactttccat
gtggactaccaaacatcaattgatgcaggtaccaaatacgtgcaaagaatgttactcgag
tacagacaacaacatcctggacctgtcataggcatcattgagtgccctaaactccaagct
ataaaggcagctgtacgagcacttgacgatttcccatgtgtaaccattcctagcaatgca
agggacaacaactatcaggctcttggttggcaagcaacagctggccgaacaagcatgcag
cgttgtgctgcatcaacccaatggttcaatgaacggatttcacttgctagatatgctcat
gtgccattgggtaatttcgaactagattggcttctttataccgctgatgtgttcttttca
agggcattgcgtgatcaacaacaggtactgtggatatctgatgatggaattcccgatcta
ggaggcacttatgaaggagacacgtgttttgctgatgaagtcattcagcctgcacttact
tatcctggtgcatatagaagggtttctgttgagcttaagatccatcatttggcggttaat
tctctcctaaagagtagtcaactggatgaaatggaaggaggatcaattagtagcttcgga
aacgacatgcctcctggtccacatgccactgagtctgactttgatgatgcgagcttatgt
ttacctgctttccaggtgctaaagcaactcattcaaagatgcatttcagatgcagtgtca
tctggaaatgtatttgctgatgcaatattgcaacatctctaccgctggctttgcagccca
cgatcgaagcttcatgacccagctctccatcgtcttcttcataatgtcatgaagaaagtc
tttgctctattgttggctgagttccgaaagctgggagctaatgttatctttgcaaacttt
tccaagattatcatagatactggaaaagtagacttggcatcagcacatgcatactgtgat
agcttattaaaaacattacaaacaagggaccttttcgagtggatagagctggaaccattg
cacttttggcattccttattattcatggatcagtataactatggcggcattcaagctaaa
acacaaaacgtggattcttcagatggtgataatgatattgacattgtttcgagctggaac
atagcagaatacttgccaaaagatacacaggatcactttgtcttaattgtatcggagttc
ctatacattccatggaaattcatgaaagaacaagtagctactcaagcaactataagggat
gatacctcatgcactccatctataacagtcatggctgctgagaacctcgagggccaggtc
atagaacacctccgtgacaagattagcacttactttgcagacaagcttttaagaactgta
agtgatatacttcaccatttcaaagggaaaagcaagtctgagtcagatgaacctgcaagt
agagaatctgatcctcacacacataaaggcgatgctgcattggagttcattaagcatatt
tgtgctgttcttgctcttgatcaaaatgttcagcatgatattctgcgaatgaggaagaac
ttgttgaagttggttcgtgtaaaggagtttgctccagaagcacaattccaagacccatgt
gcctcattcactctgccaaatgtgatttgcagctattgcaatgattgtcgggacctggat
ctctgccgcgactcaactctccaaggccaggagtggaggtgcgcggtgccacagtgcggg
cagccgtaccaccgtgagcagatggagaacgcactcctacaggtggttcggcagcgggag
aggctgtaccacttgcaggatctggtgtgcctgcgctgcaggcaagtgaaggccgcacat
ttgtctgaccaatgctcgtgcggaggctcgttccggtgcaaggaagaatcatcatatttc
ctcagcaagatgcaggtgttccgggacgtcgcggtcagccaaaaattccagctcctgcaa
gattgcgtggaatggattcttgaagtcagatga

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