Panicum hallii (Hall's panicgrass): 112886976
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Entry
112886976 CDS
T07366
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03030
DNA replication
phai03420
Nucleotide excision repair
phai03430
Mismatch repair
phai03440
Homologous recombination
phai03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112886976
03420 Nucleotide excision repair
112886976
03430 Mismatch repair
112886976
03440 Homologous recombination
112886976
03460 Fanconi anemia pathway
112886976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phai03000
]
112886976
03032 DNA replication proteins [BR:
phai03032
]
112886976
03400 DNA repair and recombination proteins [BR:
phai03400
]
112886976
Transcription factors [BR:
phai03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112886976
DNA replication proteins [BR:
phai03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
112886976
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
112886976
MMR (mismatch excision repair)
112886976
DSBR (double strand breaks repair)
HR (homologous recombination)
112886976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
zf-CCHC_2
DUF223
CDC24_OB3
BRCA-2_OB1
RMI1_C
Motif
Other DBs
NCBI-GeneID:
112886976
NCBI-ProteinID:
XP_025808825
LinkDB
All DBs
Position
3:5855884..5859838
Genome browser
AA seq
887 aa
AA seq
DB search
MAAPAQLTPGGVPAVSRHVNGEETLQAVLQVIDVRHVANKNNDNPSASDRFRMLLSDGVY
SLQSMLATAENQRIRDGSIRKGSIIHLQEYTCSTIRGRRITIVLKLDVLQSECEIIGSPK
PYELINPPTEQAPNLPANAAQVNGGAYSSGPGTLGSSVAPRVAQVANNVSHGGSYGGHPG
TVSPPIGRAVEPVPNVSSGGSYGSHGTASAHNTMNADMVQSNLQQPSLNSHQNQRFAVPA
MAGGSGTPVNTYGRPAQPFYQQPPPGHMNRGPATKNEATRAVPVAQLNPYQERWTIKARV
TSKTDLRHYTNNKGPGKVFSFHLLDAQGGEIRATCFNVQADQFFDLIEVDKVYLISRGSL
KPAQKKFNPLNHEYEITVDFRTSIEVFPSDDSSIPRQQYNFHQISEIENIEVGSIVDLVG
IVTSVCPSATITRRDGSEAQKRTLQLKDMSGRSVEVTLWGKYCDAEGQKLQSLCDSGLNP
VLALKSVRVTEFSGRSVSTISSTQLKIDPDFPEADKLRHWYAREGKTAACVSLSAASSMG
RTDIRKAVVQIKDENLGRSEKPDWITVKGAISHVNTESFCYPACTLEVNGRPCNKKVINN
GDGTWLCERCDQRLQKCEYRYLLQCQIQDHTGLTYANAFHESGVEILGYSAEELYNIKEE
DAEQFAEIIQGVRWQQFLFKLKVYEETFNDEQRVKCQISKAEKLDLSRECSYLLKAIGAL
LQDDTGSPSEVQGAMAYNAGLNNSGTGQRVPASNSAYATSMATPRYGESVNQLGQQANTY
GGVSAPFSATRNVQTCMACGSSGHNAQNCPSGIYRQQQQQQPAGSTASPYGSSPGDAGSG
PCYRCNQPGHFARNCPGVGAAPQQQPYGSGVASGAYGRQSYVRATNY
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccggcgcagctgacccccggcggggtgccggcggtctccaggcacgtcaac
ggcgaggagacgctgcaggcggtgctgcaggtgattgacgtgcggcatgtcgccaacaag
aacaacgacaaccccagcgcctccgaccgcttccggatgctgctctccgacggcgtctac
tcgctgcagtccatgctcgccaccgccgagaaccagcgcatccgggacggctccatccgg
aaggggtccatcatccacctccaggagtacacctgcagcaccatccggggacgcaggatc
actattgttctcaaacttgatgttctgcaaagtgagtgtgagataatcggaagccccaaa
ccctatgagctgataaacccacctacggagcaggcccccaacttaccggccaatgctgct
caagttaatggtggagcatattccagtggcccaggcacgctgggatcttctgttgctcca
agggttgcgcaggttgctaataatgtatcacatggtggatcttacggtggtcatccgggt
acggtgagccctccaattggtcgagcagtagaacctgttcccaatgtgtcatctggtggc
tcttacggttctcatggtacagcttcagcacataatacaatgaatgctgacatggtgcag
tcaaacttgcagcagccttcactgaactctcaccagaaccaaaggtttgcagttcctgcc
atggctggtggcagtggtactcctgtcaatacttacggccgccctgcacagcccttttat
cagcaaccacctccagggcatatgaatagaggtcctgctactaagaatgaagctacccgt
gctgttccagtggctcaattgaacccctaccaagaaagatggacaatcaaggctagggtg
acttcaaagactgatcttagacactacaccaataacaaaggtcctggaaaagtcttctcc
tttcatctccttgatgcacagggtggagaaatccgtgcaacatgcttcaatgtgcaggct
gatcaattttttgacctaattgaggttgataaggtgtacctgatatctagagggtcgctg
aaacctgcacagaagaagtttaaccctttgaatcacgagtatgaaataactgtggatttc
agaacttctattgaagttttccctagtgatgatagcagcatcccgaggcagcagtacaat
ttccatcagataagcgaaattgagaacattgaggttggttctattgtggacttggttggg
attgttacgtcagtttgcccttctgccacaataacgcggagggatggttcggaggcccag
aaaagaactcttcaactgaaagacatgtctggtcgaagtgtggaagtaaccttatggggg
aaatactgtgatgctgaaggccagaagctgcagtcgctatgtgattctggtttgaatcct
gtactagctttgaaaagtgtccgcgttactgaattcagtggtagatctgtgagcacaatc
agctcaacccagttaaaaatagacccagactttcctgaggctgataagctgcgacactgg
tatgcaagggaaggaaagactgctgcttgtgtttctttgtcagctgcaagtagtatgggc
aggactgatatccggaaagcagttgtgcagatcaaggatgaaaatctggggcgatcagag
aagccggactggatcactgttaaaggtgcaatttcgcatgtgaacactgagagtttttgt
taccctgcttgtacattggaggtgaatggtaggccgtgcaacaaaaaggtgataaataat
ggtgatgggacatggctttgtgagagatgcgaccagagattacaaaagtgtgagtatagg
tacttgctgcagtgccagatccaggatcacactgggctcacctatgctaatgcattccat
gagtctggtgtggagatacttggctacagcgctgaagagctttacaacataaaagaagaa
gatgcagaacaatttgcagagatcatacagggggttcgctggcagcagtttctattcaaa
ctgaaagtctatgaggagacctttaatgatgagcagcgtgtcaagtgccaaatttcaaaa
gcagagaagctggatttatctagagaatgctcttaccttctgaaggcgattggtgcccta
ttgcaggatgatacaggctcaccatctgaggttcaaggcgccatggcctataatgctggt
ctcaataactcgggcactggacaaagggtgccagcctccaacagcgcctatgccacgagt
atggccaccccaaggtatggtgagtctgtgaaccagcttgggcagcaagctaacacatat
ggtggggtgtccgctccattttcagcgacacggaatgtgcagacctgcatggcttgtggg
tcaagtgggcacaatgcgcagaactgcccttctggcatatataggcagcagcagcagcag
cagcctgctgggagcacagctagcccctacggctcttcacctggtgacgccggctctggt
ccgtgttacagatgcaatcagcctgggcactttgccagaaattgccctggtgtgggtgct
gcaccccagcagcagccgtatgggagcggcgttgcatcgggagcatatggtaggcagtcc
tacgttagggctacgaattactga
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