Panicum hallii (Hall's panicgrass): 112887135
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Entry
112887135 CDS
T07366
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112887135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phai03036
]
112887135
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
112887135
SWR1 complex
112887135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
112887135
NCBI-ProteinID:
XP_025809016
LinkDB
All DBs
Position
1:complement(52674642..52688195)
Genome browser
AA seq
2036 aa
AA seq
DB search
MASKGPRSKLDHETRARRQKALEHPREPRRPKVHWDHVLAEMVWLAKEFDSERKWKFSMA
KKIAQRANKSIVDQATKGERKQKEEEHRMRKVAVNISKDVKKFWIKIEKLVVYKHQLELE
ERKKKALDKQLDFLLGQTERYSTMLAENLVDMPYPQKLENGTLQTNQSSHPEEVAEENVN
AAITDDPDNMEVDDDYESSLDEEPEDDEHTIDEDEAHITEAERNEELAALQAEGDLPLDD
ILKMYTETKVKYFSVSRESSPDSKDTLSNLGSKNLIVDSLNQANGYDHEESYDDGNSSSD
DGNSSSDDGNSSEEDDDDQSYADFVKKNHGKSNGNISSIDEQEDEDYVASDEDEGKDDEA
TLSEEEELAKKEVPDHLDEIKLLQKESEIPLEELAMYQKDGYADHETTELENSPCLVEET
NTDMSLDNQSANILEVNSDTFVDHLSMDVLKTEHNVSANSLQSEIAPEPCAQQNFVEENN
LTDVNMVNEDESDDVIADAAAAARSAQPTGNTFMTTKVRTKFPFLLKHSLREYQHIGLDW
LVAMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK
WCPAFKILTYFGSAKERKQKRQGWMKPNYFHVCITTYRLVIQDSKVFKRKKWKYLILDEA
HLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFC
NPISGMVEGQDKVNKEVIDRLHNVLRPFILRRLKRDVEKQLPKKHEHVIYCRLSRRQRNL
YEDFIASSETQATLASGNYFGMISIIMQLRKVCNHPDLFEGRPIISSFDMPGINMHLSYS
VCMLLDKTPFSQVDLSEMNFLFTQNEFSMSSWESDEVVAAFPPGITSRDSDLDVSCSNKD
HQGSNVMNIFEDIQKALQEERIKESRERAASIAWWNRVRCQKRPVYGTNMREVLTVKHPV
SDILEKRNNPLCHMDYSSSLADLVLPSVGRFQKMLDIVESFTFAIPAARAPPPVCWCSKG
KSPVFIDPVYREKCMNEFSPILSPIRSAIVRRQVYFPDRRLIQFDCGKLQELAILLRRLK
SEGHRALIFTQMTKMLDVLEEFINLYGYTYLRLDGSTPPEERQTLMQRFNTNPKFFLFIL
STRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENI
LKKANQKRALDDLVIQRGSYNTEFFKKLDPMEFFSGHTLRVEDQQKDCSASAGSSNDLDV
ALSNADVEAAIRQAEDEADYMALKKLEQEEAVDNQEFSEEVAGRPEDDELVNEEDVKPDE
QINEEHRYNSSDVEKEKNVALPINQLNKEKALTLAVGDEDTDMLADVKQMAAAAAAAGQA
SSSFENQLRPIDRYAMRFMELWDPVIDKAAINHQVNVEEEEWELDRIEKLKEDLEAEIDE
DQEPLSYESWDLDFATTAYRQHVEALTQKQLLEEQERQAREAAKELEEMNDNMSSHRRKS
KKNKKKTGKFKSLKRGRLSSESEVILEETSIDTMSIDDNAPSPELISDDSPRHYSNKRKK
IMSATEEENASSRSLKKFKKFTKSSCISEALSPRHLREELNDSDPKSSSRTKSDGRISIP
CMPVKRVILIKPERLKKKGLWSRDCTSDSWTSEEDAVLCGTVHEYGPLWELASDFLHSLP
GGAFYRGRYRHPVHCCERYRELFCKHAMPAADNSNNEKVPSGTGKAILRVSEDQAQMLVN
VTSELPNNELLLQKHFMAVLSSVWRSKCWRDPRRVTSTYSSALHMFSPAKKPGGSSENWP
MVNFRPGANLVRTALADAQAQSTRMAIPPPMRNQEYHRNYLELELDFLTDQHRYNEDFPS
VVNVSILEPEPVKQAAEPVEQSLLSGLSCRQAENRFRIASEACYEGEGSHWASSAFHIND
ATRHKSGPKTIGKHKAASECGRPPKSKIQKITESHQEVPIASSHFHRMPGQLLPDAADFN
ISESLSDFGISDSEFNYSEDLWQEVDYLEFLPDQDDSVLLPGIEELEPLSDFTDIG
NT seq
6111 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgaaaggtccccggtcaaagctagaccatgagacaagagctaggcgtcagaag
gctcttgaacacccaagggagcctcgacggccaaaagttcactgggaccatgttcttgct
gagatggtgtggctggcaaaggagtttgattctgaaagaaaatggaagttttctatggca
aaaaagattgctcaaagagccaacaagagcatagttgaccaagcaacaaagggggagcga
aaacagaaggaggaggaacatagaatgagaaaagtcgccgttaatatttctaaggatgtg
aagaagttctggataaaaatagaaaagctggttgtctataagcatcaactggagcttgag
gagaggaagaaaaaggcccttgataaacagcttgatttccttttaggtcaaactgaaagg
tattcgacaatgttggcggaaaaccttgtggacatgccctatccccagaaactggaaaac
ggaactttgcagacaaatcaatcatctcatcctgaggaagtagcagaagagaatgtaaat
gcagcaataactgatgatcctgataatatggaagtggacgatgattatgagagctccttg
gatgaagagcctgaagatgatgagcacacaattgatgaggatgaagctcatattaccgaa
gctgagcgcaatgaagaattagctgctttacaggcagaaggagacctaccactggatgat
attctcaagatgtatacagaaaccaaagtcaaatatttctcagttagcagggaaagcagc
ccagacagcaaagacacattaagtaacttaggctcgaagaatttgattgtagattctttg
aaccaggctaatggctacgatcatgaagaatcatatgacgatggcaactcgtcaagtgac
gatggcaactcttcaagtgacgatggcaattcttctgaggaagacgacgacgaccaatct
tatgctgattttgttaagaagaatcatggaaaaagtaatggcaatatctcttctatcgat
gagcaggaggatgaagactatgttgcttctgatgaagatgaaggaaaggatgatgaagca
actttgtctgaggaggaggagctggcaaagaaagaagttcctgatcatctagacgagatt
aagttattgcaaaaggagagtgagataccactagaagaacttgcgatgtaccagaaggat
ggctatgcagatcatgaaacaacggagttggagaattcaccctgtcttgttgaagagact
aatactgatatgtctttggataaccaatctgcgaacattttagaagtgaacagtgataca
tttgtggatcacctatccatggatgtgctgaaaactgaacataatgtgagtgctaattct
ctgcaatcagaaatagcaccagagccttgtgcacaacaaaattttgtggaagagaacaat
ctcactgatgttaacatggttaatgaagatgaaagtgatgatgtaattgctgacgctgca
gctgctgccagatcagcacaaccaactggtaacaccttcatgacaaccaaagtgcgcaca
aaattcccattccttcttaagcactcgcttcgagaataccagcatatagggttggattgg
ttggttgctatgtatgagaagaggcttaatggaattctagcagatgaaatgggtttaggc
aagacaatcatgactatctccttgcttgcacaccttgcgtgtgagaagggaatatggggt
cctcatcttattgttgtaccgactagtgttatgctaaattgggagacagaatttctcaag
tggtgtcctgcttttaaaatattgacttacttcggaagtgcaaaggagagaaagcaaaag
cgtcagggctggatgaaaccaaattacttccacgtttgcatcacaacatacaggcttgtc
atccaggactctaaagtgtttaagcgaaaaaagtggaaatatcttattcttgatgaggct
catctgataaagaactggaaatcacagcgatggcagactttacttaattttaattcgaag
cgacgcattcttttgactggaacgccattgcaaaatgaccttatggaactttggtccctg
atgcattttctgatgcctcatgtatttcagtctcatcaggagttcaaagattggttctgc
aatccaatttcaggtatggtggagggccaagataaagtaaataaagaagttatagatcga
ttgcacaatgtccttcgtccatttatactgcggcgtctgaaaagagatgttgagaaacag
ttacctaagaagcatgagcatgtcatatattgccgactttcaagaaggcaaaggaacttg
tatgaagattttattgctagctcagagacacaagcaacactagcaagtgggaattatttt
ggcatgataagtatcattatgcaacttagaaaggtctgtaaccatccagatctttttgaa
ggtcgcccaataataagctcatttgacatgcctgggattaacatgcatctgagctattca
gtatgcatgctccttgataagactccattttctcaggttgacctatctgaaatgaatttt
ctgtttactcaaaatgaatttagcatgagttcctgggaatctgacgaggtggttgctgct
tttcctccgggtattacctcccgggactctgatctggatgtttcttgctctaataaggat
catcagggaagtaatgtaatgaatatttttgaagatattcagaaagccctacaggaggag
agaataaaggaatctagagaaagggcagcttccattgcatggtggaatagggtacggtgt
caaaagaggcctgtctatggcacaaacatgagagaagttttgactgtaaagcatcctgta
tctgatattctcgagaagaggaacaaccctttgtgccacatggattattcatcgagcctt
gcagatcttgttcttccatctgtgggacgctttcagaaaatgcttgatattgttgaatca
tttacatttgccattcctgctgctcgagctcctcctcctgtttgctggtgcagcaaagga
aagtctcctgtttttattgatccggtgtacagagaaaaatgcatgaatgagttttccccc
attctgtctcctataaggtctgctattgttcggcgtcaggtttactttcctgataggcgt
ttgatccagtttgattgtggcaagttgcaggaacttgctattctgctgaggcgtttgaag
tcagaagggcacagggccttgatatttactcagatgactaagatgcttgatgtcttggaa
gagttcataaatttatatggatatacatatttacgtttagatggttctacaccgccagaa
gaaaggcagaccctgatgcagaggttcaacacaaatccgaagtttttcctttttattcta
tctactcgtagtggtggtgtgggaatcaacctagtaggtgcagacactgtcatattctat
gacagtgactggaaccctgcaatggaccaacaggcacaggacagatgtcacaggattggt
cagactcgtgaagttcacatatatagactcattagtgaaagtactatagaggagaacatt
ctgaagaaagcgaatcagaaacgagctcttgatgatctagtgatacagcgaggtagctac
aatacagagttcttcaagaagcttgatcctatggagtttttttccggccacactcttcgt
gtggaagaccagcagaaggactgctctgcaagtgctggatcttcaaatgatttggatgtg
gcgttgtcaaatgcagatgttgaagcggctattagacaagcagaagatgaagctgactat
atggctcttaagaagctggagcaggaagaagccgtggacaatcaggagttcagtgaggag
gttgctggtagaccagaggatgatgaattggtaaatgaggaggatgtaaaacccgacgaa
caaattaacgaagaacacagatataactcttcggatgtggagaaggagaagaatgttgct
ttgcccatcaatcaattaaacaaagaaaaggctcttacattggctgttggtgatgaagat
acagacatgcttgctgatgtgaaacagatggctgccgccgcagctgctgcaggacaagca
agttcgtcctttgaaaaccagctccggccaattgatagatatgcaatgcgctttatggaa
ctctgggatccagtaattgacaaagctgctataaatcatcaagtaaatgttgaggaggaa
gaatgggagctcgatcgtattgaaaaactcaaagaggatttagaagcagaaatcgatgaa
gatcaggaaccactttcttatgaatcatgggatcttgattttgctacaacagcctatcgc
caacatgttgaggctttaactcaaaagcagttgctggaagaacaggaaagacaggctcgg
gaagcagcaaaagaattggaggagatgaatgataatatgagcagtcaccgtagaaagtca
aaaaagaacaaaaagaagacaggcaagttcaaatccttgaaaagagggcgtttatcgtct
gagtcagaagtcatactggaggaaacctctatagatacaatgagcattgatgacaatgca
ccctcacctgagcttataagtgatgactcgccacgccattattctaacaagcgtaagaag
attatgtctgctactgaggaagaaaatgctagcagcagaagtttgaagaagttcaagaaa
ttcactaaatcaagttgtatctcagaagccttgtcacctaggcacttgagggaagagctt
aatgattcagatccaaaatcatcatctagaactaagagtgatggcagaatctccatccct
tgcatgccagtaaaacgtgttattttaataaagcctgagagactaaaaaagaagggatta
tggtctcgcgattgtacttcagactcatggacatctgaggaagatgcagttctttgtgga
actgtacatgagtatggtcctctttgggaactggcaagtgattttcttcattccttacca
ggtggggctttttataggggaagatatcgtcatcctgtgcattgctgtgagagataccga
gaactattctgcaaacatgcaatgccagcagcagataattctaacaatgaaaaggttcct
tctgggactggaaaggctatactgagagtatctgaggatcaagctcagatgttggtgaat
gtgaccagtgaacttcctaacaatgaattgcttctccaaaaacacttcatggctgtactt
tcgtctgtctggagatcaaaatgttggcgtgatccccgccgtgttacgagtacttactct
agtgcactacatatgttttctcctgcgaaaaagcctggtggatcaagtgagaactggccc
atggtaaattttagaccaggcgccaatctagtgaggacagcccttgcagatgctcaggct
caatctacacgaatggcgattccgccaccgatgagaaatcaggaataccaccggaattat
ttagaattagagttggatttcttgacagatcaacatcgttataatgaggacttcccatct
gtagtgaatgtgtccatactagaaccagagccagtcaaacaggctgcggaaccagtggaa
caatcattattgtctgggctttcttgtagacaagctgagaaccgattcaggatagcatca
gaagcttgttacgaaggtgaaggttctcattgggcatcatcagctttccatataaatgat
gccacccggcacaaatctggtccaaagaccataggaaagcacaaagcagcatcagaatgt
ggaagacctcccaaatccaaaatccagaagattactgaatcacatcaggaagtgccaatt
gcctcgagtcattttcaccggatgcctggtcaattattgccagatgcagctgacttcaac
attagcgagtccctatctgactttggtatcagcgattctgaattcaactactctgaggat
ctgtggcaagaggttgactacctcgagttcctcccggaccaggatgactctgttctcctt
cctggtattgaggagttagagcctctttcagatttcacagacatcggatga
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integrated database retrieval system
