Panicum hallii (Hall's panicgrass): 112887695
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Entry
112887695 CDS
T07366
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03022
Basal transcription factors
phai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112887695
09124 Replication and repair
03420 Nucleotide excision repair
112887695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112887695
03036 Chromosome and associated proteins [BR:
phai03036
]
112887695
03400 DNA repair and recombination proteins [BR:
phai03400
]
112887695
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112887695
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112887695
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
112887695
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112887695
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
NAMPT_N
Motif
Other DBs
NCBI-GeneID:
112887695
NCBI-ProteinID:
XP_025809732
LinkDB
All DBs
Position
3:complement(7394892..7400014)
Genome browser
AA seq
758 aa
AA seq
DB search
MRFDLDGMPVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTAALISLITSYS
LANPSRPLRLIYCTRTVHEMEKTLAELRLLFGHLPPAASRSLLALGLSSRKNLCVHPQAS
AAAARDSVDTACRRLTASWVREKAASDPESTPLCEFYETFDRAAAGGDLASLMPPGVYTL
ADLRALGRQRRVCPYFLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVIVFDEAH
NIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQRGN
LPISDAWLANPALPDDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEMPVSF
VASIHSQAGIDQKMLRFCYDRLHSLMMTLEITDTDEFMHIQTICDFATLIGTYTRGFSII
IEPYDERMPDIRDPVIQLSCHDASLAIRPVFDRFETVVITSGTLSPIDLYPRLLNFNPVI
SRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVC
FFVSYSYMDGIVNSWHEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAVFF
SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDAL
RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIA
REFLRRMAQPYDKTGSGGKKTLLTEEDLQNMAEDAMEM
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgcggtttgacctggatggcatgccggtgcacttcccgtacgccgcgatctacccggag
cagcacgcgtacatgggggagctcaagcgcgccctcgacgcgcgggggcacgcgctgctc
gagatgcccacgggcaccggcaagacggcggcgctgatctccctcatcacctcctactcc
ctcgccaacccgtcccgcccgctccgcctcatctactgcacgcgcaccgtgcacgagatg
gagaagaccctcgccgagctccgcctcctcttcggccacctgccccctgccgcctcccgc
tccctcctcgcactcggcctctcctcccgcaagaacctctgcgtccacccgcaggcgtcc
gccgccgctgcccgggactccgtcgacaccgcgtgccgccgcctcacggcatcctgggtc
cgcgagaaggctgcgtccgacccggagtccacgccgctgtgcgagttctacgagacgttc
gaccgcgccgccgccggcggagacctcgcctccctcatgccgcccggggtgtacaccctc
gctgaccttcgcgcgctgggtaggcagcggcgggtctgcccctacttcctcgccaggcag
atggtcaagtacgccaatgttgtggtgtatagctaccagtacctgctcgatcccaaggtg
gccagcattgtgtcaagggagatgcagaaggagtgcgtcatcgtgttcgatgaggctcac
aacatcgacaatgtctgcatcgaggcactcagtgtcagcatccgcaagcagacgctagaa
ggtgctgagcggaatctgcggcgtatctcacaagagattgacaggttcaaggccactgat
gccaataggcttcgtgctgagtacaacagactggtggatgggctggcacagagggggaat
ctaccaatatcggatgcttggcttgccaatccggctctgcctgatgacattctgaaggaa
gctgttcctggaaacataaggagggctgagcatttccttgctgtattgcggcggcttgtg
aggttccttgatggacggctggaaacagaaaacgttgagaatgaaatgcctgtttccttt
gttgcatcaatccattcccaggctggaatcgaccagaaaatgctcaggttttgttatgac
cggctacactccctaatgatgacattagagataaccgatacagatgagttcatgcacatt
cagaccatctgcgactttgccacattgattggaacttacacacgaggcttttccataata
atagaaccatatgatgaaagaatgcctgacattcgtgatcctgtgattcagctgagctgc
catgatgcttcactcgcaataagacctgtttttgatcgctttgaaacagtggtgatcact
tctggaactctcagcccaattgatctttatcctcgtctcttgaattttaatcctgttata
agcagaagtttcacaatgtccttaacaagggattgtatttgtcccatggtcttgactcga
ggaagtgatcagctacctgtgagtacaaagtttgatatgcgtagtgatcctggtgtggtg
aggaattatggccgcctcttgctggaaatggcttctgctgttccagatggtatagtttgc
ttttttgtcagttactcctatatggatggtattgtcaacagctggcacgaaatgggaatt
ctgcaggacatcatgcaacataaattagtattcatcgaaactccagatgttgttgagaca
actttggctcttgataactacagaaaggcgtgcgactgtggaagaggtgctgttttcttc
tctgttgccaggggcaaagttgctgaaggtatcgattttgaccgacactatggcagactt
gttatcatgtttggtgttcctttccagtacacacttagccggatattgcttgctagattg
gagtacctaagagagacttttcagataaaagagggcgacttcctgacgtttgatgctttg
aggcaagcggcccaatgtgttggccgtgtgattcgctctaaagcagactatgggatgatg
atatttgctgacaagaggtacagtcgacatgataaacggtctaaattgcctgggtggata
ctgtcacacttgcatgatgctcacctaaacctgagcactgatatggctctgcatatagct
cgggagtttctccggaggatggcacagccatacgacaagacggggagcggcgggaagaag
acgctcctgaccgaggaggacctgcagaatatggcagaggacgccatggagatgtga
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integrated database retrieval system
