Panicum hallii (Hall's panicgrass): 112887991
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Entry
112887991 CDS
T07366
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog A-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03013
Nucleocytoplasmic transport
phai03015
mRNA surveillance pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112887991
09122 Translation
03013 Nucleocytoplasmic transport
112887991
03015 mRNA surveillance pathway
112887991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112887991
03041 Spliceosome [BR:
phai03041
]
112887991
03009 Ribosome biogenesis [BR:
phai03009
]
112887991
03012 Translation factors [BR:
phai03012
]
112887991
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112887991
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112887991
mRNA cycle factors
Stress granule specific factors
112887991
Spliceosome [BR:
phai03041
]
Complex C
Other components
EJC/TREX
112887991
Ribosome biogenesis [BR:
phai03009
]
Eukaryotic type
90S particles
Helicases
112887991
Translation factors [BR:
phai03012
]
Eukaryotic type
Initiation factors
eIF-4
112887991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
Utp25_C
Motif
Other DBs
NCBI-GeneID:
112887991
NCBI-ProteinID:
XP_025810091
LinkDB
All DBs
Position
1:47075600..47079872
Genome browser
AA seq
407 aa
AA seq
DB search
MAAPTTSRRGPGGARNMDDDNLTFETSPGVEVVSTFDQMGIKDDLLRGIYGYGFEKPSAI
QQRAVLPIINGRDVIAQAQSGTGKTSMISLTVCQIVDTAVREVQALILSPTRELASQTER
VMLAIGDYLNIQVHACIGGKSIGEDIRRLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLL
VLDEADEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTSKFMTEPVRILVKRD
ELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTV
SAMHGDMPQQERDAIMTEFRSGETRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR
IGRSGRFGRKGVAINFVRKDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcccaccacctcccgccgcggccccggcggcgcccgcaacatggacgacgac
aacctcaccttcgagacctccccgggggtggaggtcgtcagcaccttcgaccagatggga
atcaaggacgacctcctccgcggcatctacggctacggcttcgagaagccctccgccatc
cagcagcgcgccgtcctccccatcatcaacggccgtgacgtcatcgcgcaggcccagtcc
gggacgggcaagacatccatgatctccctcaccgtctgccagatcgtcgacaccgccgtc
cgcgaggtgcaggctttgatcctctcacctactagggagcttgcttcacagacggagaga
gttatgctggctattggtgactaccttaacatccaagtgcatgcttgcattggtggaaaa
agtatcggcgaggatatcaggaggctggagcacggagtgcatgttgtctcaggaacacca
ggcagagtctgtgatatgatcaagagaaggaccctgcgaacaagagccatcaagcttcta
gttctggatgaagctgatgagatgttgagcagaggctttaaggatcagatttatgatgtc
tacagatatctcccaccagaacttcaggtggttttgatctctgccacccttcctcatgag
atcctggagatgactagcaagttcatgaccgaaccagttaggatccttgtgaagcgtgat
gagttgaccctggagggcatcaaacaattctttgttgctgttgagaaagaggaatggaaa
tttgatactttgtgtgatctttatgatacattgaccatcacccaagctgtcattttctgc
aatactaagagaaaggtggattggcttactgaaagaatgcggagcaataacttcacggta
tcagctatgcatggcgacatgccccaacaggaaagggatgccattatgactgagttcagg
tctggcgaaactcgtgtgctaatcactacggatgtttgggctcgaggactggatgtccag
caggtttctcttgtcataaattatgatctcccaaataaccgtgagctttacatccatcgc
attggtcgttctggtcgttttggccgcaagggtgtggcaatcaattttgtgcgcaaggat
gacatccgtatactgcgagatatagagcagtactacagcacacaaattgatgagatgcca
atgaatgttgctgatcttatctga
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