Panicum hallii (Hall's panicgrass): 112888055
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Entry
112888055 CDS
T07366
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37c
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
phai04141
Protein processing in endoplasmic reticulum
phai04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112888055
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112888055
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112888055
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
phai01009
]
112888055
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phai03041
]
112888055
03009 Ribosome biogenesis [BR:
phai03009
]
112888055
03110 Chaperones and folding catalysts [BR:
phai03110
]
112888055
04131 Membrane trafficking [BR:
phai04131
]
112888055
03051 Proteasome [BR:
phai03051
]
112888055
03029 Mitochondrial biogenesis [BR:
phai03029
]
112888055
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
phai04147
]
112888055
Protein phosphatases and associated proteins [BR:
phai01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
112888055
Spliceosome [BR:
phai03041
]
Complex B
Other components
Prp19 complex
112888055
Complex C
Prp19-CDC5 complex
112888055
Ribosome biogenesis [BR:
phai03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
112888055
Chaperones and folding catalysts [BR:
phai03110
]
Heat shock proteins
HSP70 / DNAK
112888055
Membrane trafficking [BR:
phai04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
112888055
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
112888055
Proteasome [BR:
phai03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
112888055
Mitochondrial biogenesis [BR:
phai03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
112888055
Exosome [BR:
phai04147
]
Exosomal proteins
Proteins found in most exosomes
112888055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
FGGY_C
DACNG
Hydantoinase_A
Motif
Other DBs
NCBI-GeneID:
112888055
NCBI-ProteinID:
XP_025810177
LinkDB
All DBs
Position
3:60321102..60325330
Genome browser
AA seq
649 aa
AA seq
DB search
MAGKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPINTVFDAKRLIGRRFTDASVQSDIKLWPFKVISGPGEKPMIVVQHKGEEKQFAA
EEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVLRIINEP
TAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKNKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFY
STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPRVQQLLQDFF
NGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLI
PRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQDAEKYKSEDEEHKK
KVESKNSLENYAYNMRNTIRDEKIASKLAADDKKKIEDAIDAAISWLDANQLAEADEFED
KMKELESLCNPIIAKMYQGAGADMGGAAGMDEDAPAGSGGPGPKIEEVD
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggcggggaagggcgacgggccggcgatcggcatcgacctcggcaccacctactcgtgc
gtcggtgtgtggcagcacgaccgcgtcgagatcatcgccaacgaccaggggaaccgcacc
acaccctcgtacgtcgccttcaccgactccgagcgcctcatcggagatgccgccaagaac
caggtcgccatgaaccccatcaacaccgtctttgatgccaagcgtctcatcggcaggagg
ttcactgatgcttctgtccagagcgatatcaagctctggcccttcaaggtcatctctggt
cctggggagaagcccatgattgttgtccagcacaagggtgaggagaagcagtttgctgca
gaggagatctcctccatggttctgatcaagatgcgtgagattgctgaagcttaccttggc
agcactatcaagaacgctgttgtcacagttcctgcctacttcaacgactcacagaggcag
gccaccaaggatgctggggtgattgctggcctcaatgtgctgcgtatcatcaatgagccg
actgctgccgctattgcctatggtcttgataagaaggctaccagtgttggtgagaagaat
gtcctcatctttgaccttggtggtggtacttttgatgtctccctcctcaccattgaggaa
ggtatctttgaggtcaaggccacagctggtgacacccatcttggtggtgaggactttgac
aacagaatggtcaaccacttcgtccaggagtttaagaggaagaataagaaggacatcact
ggcaacccgagggctctcaggaggctgaggacagcctgtgagagggcgaagaggactctg
tcttccactgctcagaccaccattgagattgactcgctgtacgagggcatcgacttctac
tccaccatcacccgtgccagatttgaggagctcaacatggatctgttcaggaagtgcatg
gagcctgttgagaagtgcctgagggatgccaagatggacaagagcactgtgcacgatgtt
gttcttgttggtggttctactaggattcccagagtgcagcagttgcttcaggacttcttc
aacggcaaggagctttgcaagaacatcaaccctgatgaggccgttgcctatggtgctgct
gtccaggctgccatcctgagcggtgagggcaacgagaaggtgcaggacctgcttctgttg
gacgtcacccctctgtcccttggtctggagactgctggaggtgtgatgactgtgctaatc
ccgaggaacaccaccatccccaccaagaaggagcaggtgttctccacctactcggacaac
cagcctggtgtcttgatccaggtgtacgagggtgagaggaccaggacccgcgacaacaac
ctcctgggcaagttcgagctctccggcatcccccctgctccccgtggtgtcccccagatc
actgtctgctttgacatcgacgcgaacggcatcctgaacgtctctgctgaggacaagacc
accggccagaagaacaagatcaccatcaccaatgacaagggccgtctgtccaaggaggag
attgagaagatggtgcaggacgcggagaagtacaagtcggaggatgaggagcacaagaag
aaggtggagtctaagaactcgctggagaactacgcctacaacatgcgcaacaccatccgc
gatgagaagatcgcctccaagcttgccgccgacgacaagaagaagatcgaggacgctatc
gacgcggccatcagctggctggacgccaaccagctggctgaggcggatgagttcgaggac
aagatgaaggagctggagagcctgtgcaaccccatcattgccaagatgtaccagggcgcg
ggagcggacatgggcggcgccgccggcatggacgaggacgcgcctgcgggcagcggcggc
ccgggccccaagatcgaggaggtcgactaa
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