Panicum hallii (Hall's panicgrass): 112888465
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Entry
112888465 CDS
T07366
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52A-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112888465
03041 Spliceosome [BR:
phai03041
]
112888465
03036 Chromosome and associated proteins [BR:
phai03036
]
112888465
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112888465
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112888465
mRNA cycle factors
Common to processing body (P body) and stress granule
112888465
Spliceosome [BR:
phai03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
112888465
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112888465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
112888465
NCBI-ProteinID:
XP_025810471
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Position
4:complement(6350129..6355482)
Genome browser
AA seq
601 aa
AA seq
DB search
MEAYGGDGGGAWSTVASRSRRVAAPAPAPCVGGGGGDGRAPGAGELAEAVEGLEIGGGGG
CGERRLDKYDIPVEVSGEGAPPPADGFEAAGLAEAVLRNVARCGYESPTPVQRYAMPIAM
AGRDLMACAQTGSGKTAAFCLPVVSGLLAAAAEGGYGRRDKGSFERRAKPRALVLAPTRE
LAAQINEEAKKFSSQTGLRVVVAYGGTPMYDQLRDLERGVDLLVATPGRLVDMVERSRIS
LEAIKYLVMDEADRMLDMGFEPQIRKIVDMMNMPKKSVRQTMLFSATFPPEIQRLASDFL
HNYIFITVGRVGSSTDLIEQKIEFVNDGEKRGFLLDLLHKQSVRGANGKLQQPLTLIFVE
TKREADTLRYWLYSKGFPATAIHGDRTQQERESALRSFKSGATPIMVATDVASRGLDVPN
VAHVINYDLPKSVEDYVHRIGRTGRAGKAGNATAFFTETNHSLAKGLLELMTEAKRDVPK
WLVEYAEKPCYGGPSYNGRGRRGGGGFGGRDYRRSSDYGYGGNDYNNGGGAYGGGGGYSG
GGGGRGGYSGGGDGYSGGGGGGSSHGGGGGSGNSYRSSAPPPRYYPTYPMGTTDISASGW
D
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgtacggcggcgacggcggcggcgcgtggagcacggtagcgtcccgctcccgc
agggtggcggcgcccgcccctgctccttgcgtcggcggtggcggaggcgatggccgcgcg
ccgggggcgggcgagctcgccgaggcggtggaggggctggagatcggcggcggcggcggg
tgcggggagcggcggctggacaagtacgacatcccggtggaggtgagcggggagggcgcg
ccgccccccgccgacgggttcgaggcggccgggctggcggaggccgtgctccgcaacgtc
gcgcgctgcgggtatgagagccccacccccgtgcagcgctacgccatgccgatcgccatg
gccgggagggacctcatggcgtgcgcgcagaccgggtccgggaagaccgccgcgttctgc
ctccccgtcgtgagcggcctgctggcggcggcggcggagggagggtacgggcgccgggac
aaggggtcgttcgagcgcagggcgaagccgcgcgcgctcgtcctcgcgcccaccagggag
cttgcagcccagattaatgaggaggccaagaagttttcttcccaaacgggtctcagagtt
gtggtagcttatgggggaacaccaatgtatgatcagcttcgtgatctagagaggggtgtc
gatcttcttgttgctacacctggacgccttgtggacatggttgaacgatcacggatctct
cttgaggcgattaagtacctggtaatggatgaggctgacagaatgctggatatggggttt
gagcctcagataagaaagatagttgatatgatgaatatgccaaaaaagtctgtaagacaa
actatgctattcagtgcaaccttccctcccgaaatacagagactggcttctgatttcttg
cacaattacatatttatcactgtcgggagggttgggtcaagcacagacctgattgagcag
aaaattgagtttgttaatgatggggagaaaagaggcttcctgctagatcttttacacaag
caatcagttcgtggggctaatggcaagctgcagcaacccctaacattgatctttgtggag
acaaagagggaagctgacacattgcggtattggctatactcaaaaggtttccctgcgaca
gcgatccatggtgacagaacacagcaggagagggagagcgccctgaggtctttcaagagt
ggcgctactccaatcatggtagctactgatgtagcgtcaaggggtctggacgtcccaaac
gtggctcatgtgatcaattacgacctccccaagagcgtcgaggactacgtccaccggatt
ggaagaactgggagagctgggaaggctgggaatgccaccgccttcttcaccgagacgaac
cactccctggcgaagggtctgctggagctgatgaccgaggcgaagcgggatgtgcccaag
tggctcgtggagtacgcggaaaagccatgctatggagggccaagctacaatggaagaggc
cgaaggggcggtggtggttttggcggcagagactatcgccgcagcagcgactacggctat
ggcggtaatgactacaacaatggtggtggtgcctacggcggtggtggtggatactcaggt
ggtggaggcggccgcggtggctactctggcggtggtgatggctactctggtggtggcggt
gggggcagctctcatggtggaggtggaggcagtggaaattcctacagatcaagtgctcct
cctccgcggtactacccaacgtaccccatgggcaccactgatatcagcgcctctggctgg
gactag
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