KEGG   Panicum hallii (Hall's panicgrass): 112888596
Entry
112888596         CDS       T07366                                 
Name
(RefSeq) histone deacetylase 1 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
phai  Panicum hallii (Hall's panicgrass)
Pathway
phai03082  ATP-dependent chromatin remodeling
phai03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:phai00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112888596
   03083 Polycomb repressive complex
    112888596
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:phai03036]
    112888596
Enzymes [BR:phai01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     112888596
Chromosome and associated proteins [BR:phai03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     112888596
   HDAC complexes
    Sin3A-HDAC complex
     112888596
    BRAF-HDAC complex
     112888596
    REST complex
     112888596
    SHIP complex
     112888596
    MiDAC complex
     112888596
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     112888596
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    112888596
  Chromatin remodeling factors
   NuRD complex
    112888596
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 112888596
NCBI-ProteinID: XP_025810630
LinkDB
Position
4:7061411..7067351
AA seq 518 aa
MDASAGGGGNSLPTTGADGSKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLGRYGL
LDQMQVLRPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLY
SFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHQ
RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDVGHSKGKYYSLNVPL
DDGIDDESYQSLFKPIMGKVMEVFNPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRFM
RSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPANEYYEYFGPDYTLHVAPS
NMENKNTRHQLDDIRSKLLDNLSKLRHAPSVQFQERPPETELPEQDEDKENADERGDADS
DVEMNDAKPLEDSGRRSSIQGVRMKKEPAETEGTDLDVNSVAAEHSRGSGPVADGVGSSK
PTLPNDASPMAIDEQGAQKVETESSNKLQEQPTMQQKP
NT seq 1557 nt   +upstreamnt  +downstreamnt
atggacgcgtcggccggcggcggcggcaactccctgccgaccaccggcgcggacggctcg
aagcggcgcgtctgctacttctacgacgcggaggtgggcaactactactacgggcagggc
cacccgatgaagccgcaccgcatccgcatgacccacgcgctgctcggccgctacggcctc
ctcgaccagatgcaggtgctccggccccaccccgcccgcgaccgcgacctctgccgcttc
cacgccgacgactacgtcgccttcctccgctccgtcacccccgagacgcagcaggaccag
atccgcgcgctcaagaggttcaacgtcggcgaggactgccccgtcttcgacgggctctac
agcttctgccagacctacgcggggggatccgtcggcggcgccgtcaagctcaaccacggc
cacgacatcgccatcaactgggccggcggactccaccacgccaagaagtgcgaggcctcc
gggttctgctatgtcaatgacatcgtcctcgccatcctcgagctcctcaagtaccaccag
cgcgttctgtacgtggatattgatatccaccacggtgatggcgtggaggaggcattttac
accacggaccgggtgatgacggtctcgttccataagtttggggattatttccctgggaca
ggggacattcgtgacgttggacactcgaaggggaagtactactcactgaatgtcccgttg
gatgatggtattgatgatgagagctaccagtcattgttcaagccgataatgggcaaggtg
atggaggtcttcaaccctggtgctgtcgtgcttcagtgcggtgccgattccttatcaggt
gacaggttgggctgtttcaacctgtctattaaggggcatgctgaatgcgtgagattcatg
aggtctttcaatgtcccgctattgctgcttggtggtggcgggtataccataagaaatgtt
gcacgatgttggtgctatgagacaggagttgccctgggtcatgagctcactgacaagatg
cccgctaatgagtactatgagtactttggtccagattacactctacatgttgctccaagt
aacatggagaacaaaaacacacggcatcaattggatgatataagatcaaaacttcttgat
aatctatcaaaactgcgacacgctcctagtgtccaatttcaagagcgacctccagagact
gagttacctgagcaagatgaagataaagagaatgctgatgaaagaggtgatgctgattct
gatgtggaaatgaatgatgccaagcctttggaggactctggaaggagaagcagcatacaa
ggtgtaagaatgaagaaggaacctgctgagacagagggaactgatctggatgttaatagt
gtggctgcagaacattcaagaggtagtggacctgtggctgatggagttgggtcctcaaaa
ccaacactgcctaatgatgcaagtccaatggccatagatgaacaaggtgctcagaaagtt
gaaacagagagctcaaacaaattgcaggaacaaccaacgatgcaacagaaaccatga

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