Panicum hallii (Hall's panicgrass): 112888780
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Entry
112888780 CDS
T07366
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112888780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112888780
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112888780
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112888780
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
112888780
NCBI-ProteinID:
XP_025810928
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Position
1:58053928..58056883
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AA seq
288 aa
AA seq
DB search
MAMSDPTAAVIPKPDGGEDDESVEIREVWADNLEEEFALIRDIVDEFPFVAMDTEFPGIV
CRPVGAFRSPADYNYATLKANVDMLHLIQLGLTFSGPRGELPALGAGRRRCVWQFNFREF
DDARDIFASDSIELLRRSGIDFRRNAERGVDARRFAELLMSSGVVLNDSVYWVTFHAGYD
FGYLLKILTCNSLPDTQAGFFKLMKIYFPTVYDIKHLMKFCNSLHGGLNKLAELLDVERV
GESHQAGSDSLVTSCAFWKLRDSFFAGSTEKYAGVLYGLNAENGVSAH
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgtcagatcccacagccgccgtgatccccaagcccgacggcggcgaagacgac
gagtcggtggagatccgggaggtgtgggcggacaacctcgaggaggagttcgccctgatt
cgtgacatcgtcgacgagttccctttcgtcgcgatggacacagagttcccgggcattgtc
tgccgccccgtcggcgccttccgctccccggcggactacaactacgccaccctcaaggcc
aacgtcgacatgctccacctcatccagctcggcctcaccttctccggcccgcgcggcgag
ctgccggccctcggcgccgggcgccgccgctgcgtctggcagttcaacttccgcgagttc
gacgacgcgcgcgacatcttcgcatccgactccatcgagctgctccgtcgcagcggcatc
gacttccgccgaaatgccgagcgcggcgttgatgcgcgccggttcgccgagctcctcatg
tcctccggcgttgtgctcaacgattcggtatactgggttaccttccacgcgggatacgac
tttgggtacctgctcaagatcctcacttgcaacagtctcccagacacgcaagctgggttc
ttcaaactgatgaagatatatttcccaaccgtgtacgacatcaagcacctcatgaagttc
tgcaacagcctacacggtgggctgaacaagctcgctgaattgctcgacgtggagcgtgtg
ggggagtcccaccaggccgggtctgatagcctggtcacgtcctgcgcgttctggaagctc
agggattcattcttcgctggatcaacagagaaatacgcaggtgtgctgtatgggctcaat
gcagagaatggtgttagtgcacattga
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