Panicum hallii (Hall's panicgrass): 112888821
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Entry
112888821 CDS
T07366
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112888821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phai03041
]
112888821
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112888821
Spliceosome [BR:
phai03041
]
Complex C
Other components
Step II factors
112888821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
S1
AAA_19
GIPC1_GH2
AAA_16
Cas3-like_C_2
nSTAND3
ABC_tran
TsaE
PhoH
Sigma54_activ_2
AAA_30
AAA_33
ATPase
T2SSE
Motif
Other DBs
NCBI-GeneID:
112888821
NCBI-ProteinID:
XP_025810943
LinkDB
All DBs
Position
4:33743816..33747421
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AA seq
1059 aa
AA seq
DB search
MAAPTATTGAGSVGEEMRRLTQLSLVSKVCSELEAHLGVADRVLAEFVVDLGRASASAAD
FAAALRDHGAELPGYFVRSLHAVITAIPDHAPAAQNPITSRVAGTGRRRDDKEAESDGEP
ELYQVRRGRVTRVADAVCFVRIDGASGREGLVHVSQMPGHRVSATRGQEVFVKVVSVDGT
KLGLSMRDVDQDTGRDLLPFRLRSWEDDVPRTNPTAHRATAAGNRKGVSGNCVPDEDEVG
PAPRRPTRRMSSPERWEMKQLIASGVLDAKDYLGSDEDDDRMLYQEEAEELEIELNEDEP
AFLQGKARSTADLSPVRISKNPEASALVNERRDIHTQEQRGMVDAIPKDLNRSWEDPMSG
GRYLMQELIGTGLAAQSVPEWKVSYGKAGTYGQRSRLSVQEQRESLPIFRLKKELINAVH
DNQVLVVIGETGSGKTTQVTQYLAEAGYTTMGKIACTQPRRVAAESIAKRVAEEFGCRLG
EEVGYSIRFDDRTGPGTVIKYMTDGMLLRETLVDGDLSSYSVVMLDEAHERTIYTDILFS
LLKQLIKRRSDLKLIVTSATLDAEKFSGYFFDCKIFTIPGRTFPVEIQHTKQPESDYMDA
ALITVLQIHLTEPEGDILLFLTGQEEIEHACERLHERMKTFGEDVPALIICPVYSALPTE
GQSKIFEPAPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKLNVYNPKLGLDSLVITSI
SQASAKQRAGRAGRTGPGKCYRLYTESAYHNEMAPTTTPEIQRANLGWTVLNMKAMGIND
LLTFDFMDPPASQALVSAMEELYSLGALDEEGLLTRLGRKMAEFPQEPPLSKMLLASVDL
GCSDEILTIIAMIQTGNIFYRPREKQAQADRKISNFFQPEGDHFTLLTVYEAWKAKGFSG
PWCFENFVQINSLRRAQDVRKQLLEIMDKYKLDVASAGNNPTKIGKALAAGFFFHAARKD
PSGGYRTRADHQQVYIHPSSALFHQQPQWVIYHEIVMTTKEYMREVTAVDPRWLVELAPR
FYRSEDPTRISKRKRQERIEPLYDRHSEPNSWRLSKRRW
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcccacggcaacgaccggcgccggctcggtgggggaggagatgcggcgtctc
acgcagctctccctcgtctcgaaggtctgctcggagctcgaggcccacctgggcgtcgcc
gaccgcgtcctcgccgagttcgtcgtcgacctcggacgcgcctccgcctccgccgccgac
ttcgccgccgcgctcagggatcacggcgccgagctcccgggctacttcgtccgctccctc
cacgccgtcatcaccgccatccccgaccacgcccccgccgcccaaaaccccatcacctct
cgtgtcgccggtacggggagacgccgggacgacaaggaggcggagagtgatggggagccg
gagctgtaccaggtgcgccgcgggagggtcacccgcgtggcggacgccgtgtgcttcgtc
cgcatcgacggcgctagcggccgcgaggggctcgtgcacgtctcccagatgcccggccac
cgcgtatctgccacgcgcggccaggaggtgttcgtcaaggtcgtctcggtggacggcacc
aagcttgggctatcgatgcgagacgtcgatcaggatacggggagggatctcctcccgttt
cgtctgcgttcttgggaggacgatgtgccaaggaccaatccaacggcccatcgcgccaca
gccgctgggaatagaaagggggtttcggggaattgcgttcctgatgaggatgaggtgggc
cctgcgccacgccggccaactaggcggatgagctcgccagagaggtgggagatgaagcag
ctgattgcgtcgggagtattggatgccaaggactacctggggtctgacgaggatgacgat
aggatgctttaccaggaggaagcagaggagctggagattgagctcaatgaggatgagcct
gcgttcttgcagggaaaggcgcggtccacggctgacttgtctccagtgaggatttccaag
aatcctgaggcatctgcacttgttaatgagaggcgtgatatccacactcaggagcaaaga
ggaatggttgatgcaatacccaaggaccttaatcggtcgtgggaggaccccatgtcaggt
gggcggtatctgatgcaggagctgataggcactggactagcagcacagagtgtgccagaa
tggaaggtgtcatatgggaaggctggaacatatgggcagaggtcgaggctctcggttcaa
gagcaaagagagagccttccgatattcaggctcaagaaggagctgattaatgctgttcat
gacaaccaagttttggtggttatcggtgagactggctcagggaaaacaacccaggttacg
caataccttgctgaggcaggatatactacaatgggtaaaattgcatgtactcagcctcgc
agggttgctgcagagtcaattgcaaagcgtgtagcagaggaatttggctgtcgattagga
gaagaagtaggttattcaattcgctttgacgaccgcactggacctggaactgttatcaag
tatatgacagacggtatgctcctacgagagactttggtggatggagatttgtcatcttat
tcggtggttatgcttgatgaggcacatgagagaactatctacacagatattctcttcagc
ttgctaaagcagctaattaagcggagaagtgatctcaagttaatagtcacttcagccact
cttgatgctgagaagttctctggctatttttttgattgcaaaattttcacaattcctgga
agaacttttccggttgagatacagcatacgaaacagccagagagtgactacatggatgct
gcactgatcactgtattgcagattcatttgactgaacctgaaggagatatcctcttgttc
ctgactggccaagaagagattgaacatgcttgtgagcgtctccatgagaggatgaagaca
tttggtgaggacgtaccagcgctgataatttgtcctgtgtacagtgctcttcctactgaa
ggtcagtcaaagatcttcgagcctgctcctcctggtaagaggaaggtggtcgtggccacc
aacattgcggaagcatctcttacgatagatgggatttactatgttgttgacccaggcttt
gcaaagcttaatgtctataacccaaaactagggctggattcactggttatcacttcaatc
tctcaggcgtcagctaagcaaagagcagggcgtgctggacgtacaggcccgggtaagtgt
taccgtctatacactgagagtgcctatcacaatgaaatggcccccacaacaactccagag
atccagagggccaacttggggtggacggttcttaatatgaaggcaatgggaattaatgac
ctgttgacatttgacttcatggacccaccagcatctcaagcacttgtgtcagctatggaa
gaattgtacagtcttggtgccttagacgaagagggccttcttaccaggctagggagaaag
atggctgaatttccacaagagccacctctttcaaagatgctccttgctagtgtagacctt
ggatgcagcgatgaaatattgacgatcattgcaatgatacaaactggaaacatattctat
cggccaagagagaagcaagctcaagcagatcggaagatatcaaactttttccagccagaa
ggtgatcatttcacccttctcactgtgtacgaggcatggaaggcaaaaggattttcagga
ccatggtgctttgagaattttgtccagataaactcattaaggagggcacaggatgtgcgg
aaacaacttcttgagatcatggataagtataagcttgatgttgcctcagctgggaacaat
cccaccaagatagggaaagcccttgccgctggattcttcttccatgctgcaaggaaggat
cccagtggaggataccggacccgtgctgatcatcagcaggtgtatatccacccaagcagt
gccctctttcaccagcagcctcagtgggtgatctaccatgaaattgtcatgacgacgaag
gaatacatgagggaagtcacagccgttgacccaagatggctagtagagctggcaccaagg
ttctacagatcagaggacccgacgaggatcagtaagcggaagcgccaagagaggatcgaa
cccctttatgatagacacagtgaaccgaactcgtggcgtttaagcaagcgccgttggtaa
DBGET
integrated database retrieval system
