Panicum hallii (Hall's panicgrass): 112888833
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Entry
112888833 CDS
T07366
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112888833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112888833
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112888833
mRNA degradation factors
5'-3' decay
Decapping complex
112888833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML_2
Beta-prop_WDR75_2nd
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_EDC4L
DUF445
Motif
Other DBs
NCBI-GeneID:
112888833
NCBI-ProteinID:
XP_025810960
LinkDB
All DBs
Position
4:40553666..40562442
Genome browser
AA seq
1286 aa
AA seq
DB search
MASPSGNPNPAPSAPFELSKLFRPPANPNHPTTAPTPTGVFPGSPVPATGPSPTGPYYHP
PATPPFHRGSYLHYPNDPHSFHHPAAAAFANANSTANPIPNPGPGPNPGARLMQLLGNTA
PTHLESASSMPPSSEFSAVPAGALPASSSAPPARMPSSKMPRGRLLGLGDRAVHDVDSRL
PGEAEPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSLLRG
HTQRVTDMAFFAEDVHRLASASVDGRVYVWKIDEGPDEENKSQISGKIEIAIQIIGDAET
YHPRICWHSHKQEILYVGIGNFILRIDITKVGRGRDFNTEEPLRCPLDKLIDGVSVVGKH
GGDITDISISQWMTTRLASASKDGTVKVWDDRRVAPLSVLKPHDGQAVYSVSFLTAPERP
NHINLVTAGPLNREVKIWASTNEEGWLLPSDLETWKCTQTLELVSSLEHRSEEAFFNQVA
VLPQASLILLANAKKNAIYAVHVEYGQDPASTRLDYIADFTVTMPILSLTGTHETHPDGE
QIVQVYCVQTMAIQQYGLELSLCLPPTADNTGSGRDPALPHLNERLPEMAALEPSTGTTP
VESSIAVSTKPSNDSQGTAFTSKMNQAGSPVVLSRHPSVGDRDADQSSFGRKDSFGKEEP
RGVQSDGITISDPRPVFQGGGHATHLITPSEIISGVVTSAETVASGTSQNVEAEAKHVDV
RKSNQTVELEAGKETQILPEKKERSVMPSEQTVDAVSERTITDKYSVDDSQSLPDRSVPT
LLKQSSGAGDESVVKRATEASEETEHPCASRDLPLPSAIKEGKIIHPQVSGQLSPSTSTF
NSADSSQEPRINENPPIDPSLQAAAIQGSLQQLMATYSNLQKQLSMLVSAPIAKEGKRIE
ASLGRNMEKSIKANIDAMWARFQEENARHEKSERERMQQMATLIASSVNKDIPVMLEKSL
KKEISSLGPAVARTTAPIIEKLLSSAVSDSLQKVLGDKVVNQLDKSISTKLEASVARQIQ
TQFQTSAKQTLQDAFRSSFESSVIPAFEQSCKKIFEQVDGSFQKGMSEHSAAIQQQVLTA
HTPLAQTLREAINSASSMNQGATSELLDGQRKLLSLFASASPTSQSTGALQPSNGPVMNL
PEVDAPLDPMKELGRLIAERKFDEAFTMALQRSDVSIVSWLCSQVDLQALCGTVPIPLNQ
GVLLALFQQLACDIANDTSRKLQWMTNVAVAIQPTDPIIAMHVRPIFEQVYGVLAHQRSL
PTTNASDATKISLIMHVITSVLMSHK
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggcttctccgtcggggaatcctaaccccgctcccagcgcccccttcgagctcagcaag
ctcttccggccgccggcaaaccctaaccaccccaccaccgccccgacccccaccggcgtc
ttcccgggctcgcctgtccccgctaccgggccatcgcccacagggccctactaccacccg
ccggccaccccgcccttccaccgtggcagttacctccactatcccaacgacccccacagc
ttccaccaccccgccgcggccgccttcgccaacgctaactccaccgcaaaccctatcccg
aacccaggcccgggcccgaacccgggggcgcggctcatgcagcttctcggtaacaccgcg
cccacccacctggagtcggcgtcgtccatgccgccctcgtcagagttctccgcggtccct
gcgggggcgctcccggcatcgtcgtccgcgccaccggcgaggatgcccagcagcaagatg
ccgcgcgggaggctgctgggtctcggggaccgagcagtgcacgacgtggactcgcggctg
ccaggggaggcagagccgccacagctggaggtgacgcccataaccaagtacacctcggac
cccgggctggtcctcggcaggcagatcgccgtgaacaggacgtacatcgtgtatgggctt
aagctaggcaacatccgtgtgctcaacattaacaccgcgctccgctccctccttcggggg
cacacacagagggtgacggacatggccttttttgcagaagatgtccatcgtctagcaagt
gcaagtgtagatgggcgggtatacgtttggaagattgatgagggacctgatgaggaaaat
aaatctcaaatctcaggaaagattgaaatcgccatccagattataggagacgctgaaacc
tatcatccgagaatatgttggcactctcataagcaagagattctgtatgttggaattgga
aatttcatcctaagaatagacataacaaaagtgggaagaggaagagacttcaatacggaa
gagcctttaagatgcccacttgacaagctcattgatggtgtgagcgtagttggtaaacat
ggtggagacattactgatatctccatatctcaatggatgactacacgtctggcttcagca
tcaaaagatggcacggtaaaggtctgggatgatcgaagggtagcccctctgtctgtgctg
aaaccacatgatggtcaagctgtttactcggtttctttccttacagcacctgaacgacca
aatcatataaatcttgttacagcaggcccgctcaaccgagaagtaaaaatttgggcctcc
actaatgaagaaggctggttgttgccaagtgacttggagacatggaaatgcactcaaacg
ttggaacttgttagttctctggaacataggtctgaggaggcatttttcaaccaagttgca
gtgttgccacaggctagccttatattgcttgcaaatgccaaaaagaatgctatttatgct
gtgcatgttgagtatggtcaagatcctgcctcaactcggttggactacatagcagatttt
actgttacaatgcccattttgagtctcacgggaacacatgaaacccatcctgatggtgaa
caaattgttcaagtttattgtgtccagacaatggctatccagcagtatgggttggagtta
tcactctgtcttcctcctacagctgataacactggatctggaagagaccctgctcttcct
catttaaacgagaggcttccagaaatggcagcactggagccttccacaggaactactccc
gttgaatcttctattgctgtttcaactaagccatcaaatgacagtcagggcacagctttt
acatcaaagatgaatcaggctggatctccagttgtcttaagtagacatccttcagtgggt
gatcgtgatgcggaccaatcatcttttggtagaaaggatagcttcggaaaggaagagcca
agaggcgtccagagtgatggtataacaatttctgatcctcgtcctgtgtttcagggggga
ggccatgctacgcacttgataactccatctgaaattatttcaggtgtggtcacttctgca
gaaacggttgcaagtggcacctcgcagaatgtggaagcagaggcaaaacatgtagatgtg
agaaaatcaaatcaaactgttgaacttgaggctggtaaggagacccaaattcttcctgaa
aaaaaagagagatctgtcatgccttcagagcaaactgtagatgcggtcagtgaacgcaca
ataactgacaagtacagtgtagatgattcacagtctctgcctgatagatcagtaccgact
cttttgaaacagtcttctggggctggagatgaaagtgttgtgaagagagcaactgaagct
tctgaggaaactgaacacccttgcgcctcaagggatttaccattaccctcagctatcaaa
gaggggaaaatcatacatcctcaagtgtctgggcagttatctccttctacaagcacattc
aactctgctgattcctcgcaagaacctcgaatcaatgagaaccctcctattgatccctcc
ctgcaagctgcagctattcaaggatcgctgcaacagcttatggccacatatagtaacctg
caaaaacagttgagtatgcttgtgtctgctccaattgcaaaggaaggcaaaagaattgag
gcatcacttggtcgaaacatggaaaagtccatcaaggctaacattgatgccatgtgggcc
cgtttccaggaggaaaatgcaaggcatgaaaaatctgaaagagagcgaatgcagcagatg
gctactctaatcgcgagttctgtaaacaaggatattcctgttatgctggagaagtcatta
aagaaagaaatatcttcactggggcctgctgttgctcgaacaaccgcacctatcattgag
aagctcttgtcttctgctgtgtctgattcacttcagaaagtgctgggtgacaaggttgtt
aatcagctagataagtctataagcacaaaacttgaagctagtgttgctaggcagatccaa
acacagttccagacatccgccaagcagacacttcaggatgcgttccgctctagctttgag
tcgtcagttattccagcgtttgaacaatcatgcaagaaaatatttgagcaagtagatggt
tcatttcagaaaggcatgtctgagcacagtgctgctatccagcagcaggtcctgacagca
catactccattagcacaaactctaagggaagcaatcaattcagcgtcatccatgaaccag
ggtgctacatcagagttacttgatggccagcgcaagcttttgtcactatttgcatcagca
agcccaacatcacagagcacaggtgctttgcagcccagtaacggacctgtgatgaatctc
cctgaggttgatgctccattggatcctatgaaagaactaggccgactgattgctgagcgg
aaattcgatgaggcatttacaatggctcttcaaagaagcgatgtctctatagtttcttgg
ttgtgttctcaggttgatttgcaagcattgtgtgggacagttcccatccctctgaaccaa
ggggttctcctagcccttttccagcagctagcgtgtgacattgccaacgacacgtcccgg
aagcttcaatggatgacaaatgttgctgtggcaatacaaccaacagatccgataatcgca
atgcatgtaaggccaatattcgaacaagtctatggtgtcctggcacaccagcggtcgctg
ccaacaaccaatgcatcagatgcaacaaaaatcagcttaatcatgcatgtgatcacctca
gtgctgatgagccacaagtga
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integrated database retrieval system
