Panicum hallii (Hall's panicgrass): 112888877
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Entry
112888877 CDS
T07366
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112888877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112888877
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112888877
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112888877
mRNA degradation factors
3'-5' decay
Ski complex
112888877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
112888877
NCBI-ProteinID:
XP_025811033
LinkDB
All DBs
Position
1:complement(2983148..2996193)
Genome browser
AA seq
1379 aa
AA seq
DB search
MDGPAPSPASELPFRISFSGHGGHLRLDPTPHPSSPIPEFVLPPAYPPGSPSSLKEYLEA
NYLNPELHLPTAADAGRVWDVDWFALTRPPLEPSAPRTVLAPAWEPPFRRGRGTSQPALE
SQVWDPESVQMEMGEVFGSGTVGLAPRMPGPAKDFVRGSINNRPFRPGGLQDDDVEAAAL
EKAFPEGARNGDWMRELMTGGPAQVAPPGFRKGLELGQLKEYKSQWKCFRNGELVEEQPV
SSSNDAMEKYSVQFDDLFKIAWEEDAANKALQEGGVQQSAEDEGTKDFHFPMAEVGEQKV
DVWQGASETITKLDAENHEADVIRDDPETQTDLDQMLSSEVQDTRKESGISGDDKPTHDG
KVWALVGGDEDIVTNFYNLVPDMAIDFPFELDKFQKEAIYYLEKGESVFVAAHTSAGKTV
VAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSIRPEATCLIMTTE
ILRSMLYRGADIIRDIEWVIFDEVHYVNDAERGVVWEEVIIMLPKHINIVLLSATVPNTV
EFADWIGRTKQKKIRVTSTNKRPVPLEHCLFYSGEMYKICERDTFLTQGFREAKDAFKKK
NSNKLGVKPGPKSGTPAVRAGIQGKNPDTSSRGRDQKYPKHHNANSGAAAVSQSSSGPKR
SESSFWMPLVNNLLKKSLVPVVIFCFSKNRCDKSADSMFGTDLTSSSEKSEIRVFCDKAF
SRLKGSDRNLPQVVGIQSFLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMG
VNAPARTVVFDSLRKFDGKEHRKLLPGEYIQMAGRAGRRGLDNIGTVIIMCRDEIPEESD
LKNLIVGKPTRLESQFRLTYTMILHLLRVEELKVEDMLKRSFAEFHAQKNLPEKEKLLLQ
MLRQPTKTIECIKGEPSIEEYYEMSLEAEAHRECITEAIMQSSSAQQFLMPGRLVVVKSE
TDDDHLLGVILKGPSQALNKYIVLVLTGDCTSSALSPELSNKTEKEPGDFQQGRFITPKG
KRGMDDEYYSSGSSRKGSGVIKISLPYKGDASGMGFEVRAIEKKEIMSICTSKIKIDQVK
LLEDGSKAAYFKTVQLLIKEQPEGTKYPPALDAIKDLNLKSMSLVESYHAYHRLLQKMSE
NKCHGCIKLKEHISLMREQKVYKDQLNELKFQMSDEALQQMPEFQGRIDLLKVINYIDSD
LVVQLKGRVACEMNSGEELISTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEPSLTPK
LTEAKKRLYDTAIRLGTLQAQFKVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELT
DVSEGLIVRTIVRLDETCREFRNAASIMGNSALYKKMEVASNAIKRDIVFAASLYVTGI
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggacggccctgccccctcgccggcgagcgagttaccgttccgcatcagcttctccggc
cacggtggccacctccgcctcgaccctaccccgcacccttccagccccattcccgaattc
gtcctgccgccggcctacccgcctgggagcccgagcagcttgaaggagtacctcgaggcg
aactacctcaaccccgagctccacctccccaccgcggccgatgccgggagggtgtgggac
gtggactggtttgcactgaccaggccgccgctggagccctccgcaccgcgcacagtgctc
gcgcccgcctgggagccgcctttccggcgcggccggggaacgtcgcagcctgcgttggag
tcgcaagtgtgggatcctgagtccgtgcagatggagatgggcgaggtgttcggttcgggg
accgtgggtttggcgccacggatgcctggtccggcgaaggacttcgtcagggggagcatc
aacaacagaccctttcgtccgggtggtctacaggatgacgatgttgaggcggctgcattg
gagaaggcattcccggagggtgcgcgtaacggtgattggatgcgtgagcttatgactggt
ggcccggcacaggttgctcctccggggttccgcaagggattggaattgggccaattgaag
gagtataaaagccaatggaagtgtttccggaatggagaacttgtagaggagcaacctgta
tcgtcatcgaatgacgcaatggagaagtactcagtgcagtttgatgatcttttcaagata
gcgtgggaggaagatgctgccaacaaggcattgcaggagggtggtgttcaacaatcggct
gaagatgagggaaccaaagattttcattttccgatggcagaagttggcgaacaaaaagtt
gatgtgtggcaaggtgcttctgagactataacaaagctagacgccgagaatcatgaagca
gatgttataagggatgatcctgaaactcaaacagacttggatcaaatgttatcttctgaa
gttcaagatacacgaaaagaatcaggtatatcaggtgatgacaagccaacacatgatggc
aaggtttgggcacttgttggtggggacgaagatattgtgactaacttctacaatctcgtt
ccagatatggcaatcgactttccatttgaattagataagttccagaaggaggctatatat
tatcttgagaagggtgagtcagtcttcgttgcagcccatacttcagcaggaaagacagtt
gttgccgagtatgcatttgctttagcaacaaaacattgtactcgggctgtctatactgct
cctattaaaactatcagcaaccagaaataccgagatttctctggaaagtttgatgtggga
cttctgacaggagatgtcagcatcaggccagaggcaacttgtttaattatgactactgaa
atattgcgctcaatgctctacagaggtgcggacattatacgtgacattgaatgggtaatc
tttgatgaagtgcattatgtaaacgacgctgaaagaggtgtagtttgggaggaagttatt
ataatgctcccgaagcacattaacattgttctcctttcggcaacggttccaaatacagtt
gaatttgctgactggattggtcgaacaaagcagaagaaaattcgtgtcacgtcgactaac
aaaaggcctgttccgcttgagcattgcttgttctattctggagaaatgtacaaaatatgt
gagagggatacctttcttactcaagggtttagagaagcaaaggatgctttcaaaaagaaa
aattctaacaagcttggagtgaaacctggtccaaaatcaggaacacctgcagtacgtgct
ggaattcaaggcaaaaatcctgatacatcaagcagggggagagatcagaagtacccaaag
caccacaatgccaattcaggagcagcagcagtttcacaaagctcctcagggccaaagaga
tcagaatcttcattttggatgccacttgtgaataacctgctgaagaaatcccttgtgcct
gtggtgatcttttgtttctcaaagaaccgttgtgataaatcggcagatagcatgtttggc
actgatctcaccagtagttcggagaaaagtgaaatccgtgtcttctgtgacaaggcattt
tcgcgccttaaaggatctgataggaaccttccacaggttgtaggaatacaaagttttcta
cgaagaggaattggagtacaccatgctgggcttctccctattgtgaaggaagtggttgag
atgctattctgtcgtggcgtaatcaaggtactgttttccactgagacatttgctatgggt
gttaatgcaccagcaagaacggttgtgtttgattccttaagaaagtttgatggaaaagaa
caccgaaaattgcttccaggggagtatattcaaatggctggacgagctggtaggagagga
cttgataacattggtacagtgatcattatgtgtcgtgatgaaattcctgaagaaagtgat
ttgaaaaatttgattgttggaaaaccaactcgattggaatctcaatttcgattaacatac
actatgatactacatcttctacgtgtggaggaactgaaggttgaggacatgctcaagaga
agttttgcagaattccatgcacaaaagaatttgcctgagaaggaaaagctacttctacaa
atgcttcgtcaacctacaaagacaatagagtgcataaaaggagagccttcaattgaagaa
tactatgagatgtcattagaagctgaggcgcatagggaatgtataacagaggcaattatg
cagtcgtccagtgctcaacagttcctaatgcctgggagattggtggtcgttaaatctgaa
actgatgatgatcacttgcttggtgttatattgaaaggtccatctcaagcactaaacaaa
tacattgttcttgtattgactggtgattgcacttcatctgcattatcccctgagctgtcc
aataaaactgaaaaggaacctggggattttcaacaaggacgctttattaccccgaaagga
aaacgtggcatggatgatgaatattactcttccggcagctcacgaaaaggttcaggtgtt
atcaaaatctccctaccatacaagggggatgcatctggaatgggctttgaagtaagagca
atagagaaaaaagagatcatgagtatatgcaccagtaaaataaagattgatcaagttaaa
ctccttgaggacggtagcaaagctgcttacttcaaaactgtccaactgcttataaaagag
caaccagaaggaactaagtatcctcctgctttagatgcaataaaagatctaaatctgaag
agcatgtctcttgttgaaagctaccatgcatatcacagactactgcaaaaaatgtctgaa
aacaagtgtcatggttgtataaaactgaaggagcatatatcattgatgagggagcaaaag
gtgtacaaggatcagctgaatgaattgaaattccaaatgtcagatgaggcgcttcaacag
atgccggagtttcaaggcagaattgatttactaaaggtaatcaactacattgattctgat
ctagttgtgcaacttaagggacgagtagcctgtgaaatgaactccggtgaggagctaata
tcaacagaatgtctgttcgagaatcaattggatgacctagaacctgaagaagccgtggcc
attatgtctgcatttgtcttccagcagaggaatacatcagaaccatctcttactccaaaa
ttgactgaagccaaaaagaggctttatgataccgcgatcagactaggaacgctccaagca
cagttcaaggtacctgtggatcctgaggagtatgcacgtgacaatctcaagtttggcctt
gttgaggttgtctacgagtgggcaaagggaactccttttgcggacatatgtgagctgaca
gatgtatccgaggggctcattgtaagaacaatcgtccggctggatgaaacatgcagagaa
ttcaggaacgcggcttcgataatggggaactctgcgctgtacaagaagatggaggtcgcg
tctaatgctatcaagcgtgacattgtgtttgcagcaagcttgtatgtcacaggaatctga
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