Panicum hallii (Hall's panicgrass): 112888905
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Entry
112888905 CDS
T07366
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112888905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
phai03009
]
112888905
Ribosome biogenesis [BR:
phai03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
112888905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_VPS8
Beta-prop_WDR75_2nd
WD40_RFWD3
PEP5_VPS11_N
VPS8_N
Utp12
Motif
Other DBs
NCBI-GeneID:
112888905
NCBI-ProteinID:
XP_025811081
LinkDB
All DBs
Position
4:complement(4629305..4638145)
Genome browser
AA seq
905 aa
AA seq
DB search
MGIFEPFRAIGYITAGGVPFSVQRLGSETFVTVSVGKAFHVYNCAKLNLVLAGPQLPKKI
RALASHKDYTFAAYGSDIAVFKRTDQVVTWSRHEEKVNMLYLFGEYVLSADVKGNIFIWA
FKEAEPNSEPVGSISLGDKFTPTCIMHPDTYLNKVIVGSEEGPLQLWNISTKKKLYDFKG
WESPVRCCVSSPALDVVAVGCSDGTVHVHNIRYDEALMSFNHQIRGAVTALSFRTDGQPL
LASGGSSGVISIWNLEKKRLHSVIREAHDGSIVSLHFFANEPILMSSAADNSIKMWIFDN
NDGDARLLRFRSGHSAPPRCIRFYGNGKCILSAGQDRAFRLFSVVQDQQSRELSQRHVTK
RAKRLRVKEEEIKLKPVITFDCAEIRARDWCNVVTCHMDTPQAYVWRLQNFVIGEHILTP
SSGTETPIKACVISACGNFTILGTEGGWIEKFNLQSGISRGGYIDTSLARQCAHEGEVVG
LACDATNGSLISAGYHGDIKVWDFKTCKLKSRLDVGKSVTKIAYHRANGILATVVDDMVL
ILFDTVAMKMVRRFEGHTDRITDLCFSEDGKWLISSSMDGTLRIWDISLARQIDAMHVDV
SITSLSMSPNMDVLATTHVDQNGVYLWVNQFLFSTSTNIENYASGKHVRNVCLPAVSSVE
RSEEEQAHDSGDSNQSNIKPFVIMDHQIPNLITLSLLPRSQWQSLTNLDIIKVRNKPIEP
PKKPEKAPFFLPSVPSLSGEILFEPPASSKETDSSTTENTKHKKMAELSSQLGLLLQSCG
ETKNYSAFTDYMKGLSPSSLDMELRLLQIIDDEESEDLEQRPELQSISSLLDYFIHELSC
RNNFEFIQAILKLFLKIHGETIRRHSTLQSKVKKLLEVQSLVWQKIDKMFQGARCMVTFL
SNSQF
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgggtatcttcgagccgttcagggcgatcgggtacatcactgcgggcggcgtgcccttc
tccgtgcagcgcctcggcagcgagaccttcgtcaccgtcagcgtcggcaaggccttccac
gtctacaactgtgctaagctgaatttggttctagctggaccccaacttcccaagaagatc
cgtgctctagcatcccataaggattatacctttgctgcatatggaagtgatattgcagtt
tttaagaggactgatcaggtggttacttggagtagacatgaagaaaaggtcaacatgcta
tacctgtttggagaatatgttcttagtgcagatgttaaaggcaatatattcatttgggcc
ttcaaagaagcagaaccaaacagtgagccggttggaagcatatcattgggagacaagttt
accccaacctgtatcatgcatcctgatacttatctaaataaggtaattgttggtagcgag
gaaggccccttgcagctgtggaatatcagcacaaagaaaaaactgtatgatttcaagggt
tgggagtcaccagttcgctgttgtgtatcctcacctgctttagatgtagttgctgttgga
tgctctgatgggacagttcatgttcataatatacgatatgatgaagcattgatgtctttc
aaccatcagattcgtggtgctgtgactgcactgtcatttcgaacagatgggcaaccgctt
cttgcctctggaggttcttctggcgttattagcatatggaatcttgagaagaaacggctg
cattccgtgattagggaggcccatgatggctctatagtttcacttcatttctttgccaat
gaacctattctgatgagctcagctgctgataattcaattaaaatgtggatattcgataat
aatgacggagatgctcgtctgttacggtttcgaagtggtcacagtgctccacctagatgc
ataagattctatggcaatggaaaatgcatcttatctgctggtcaagatcgtgcctttcgt
cttttctcagttgtccaggatcaacaaagtagagaactttctcagcggcatgtcacaaaa
agagcaaagaggcttagagtaaaggaggaagagatcaagctaaaaccagttattacattt
gactgtgctgagatacgtgcgcgtgattggtgtaatgttgttacgtgccacatggatact
ccacaggcatatgtatggcgtcttcagaattttgttattggtgagcatattctaacacca
tcatcaggcactgagacaccaatcaaggcctgtgtgataagtgcatgtggtaactttact
atcttgggcactgaaggtggttggatcgaaaaatttaaccttcaatcagggattagtcgt
ggtggttacatcgacacttcattggcaaggcaatgtgcacatgaaggagaagttgttggg
ttagcttgcgatgctacaaatggctctctgattagtgctggataccatggtgatattaag
gtgtgggattttaaaacatgcaagctaaaatccagattggatgttggtaaatctgtcact
aaaattgcataccaccgggcaaatggtattcttgcaaccgtagtagatgatatggtacta
atattgtttgacacggtggccatgaaaatggttcgtagatttgaaggacatacagaccgt
atcactgatttgtgcttcagtgaagatggaaaatggctcatctcatctagtatggatggg
actcttaggatatgggacatcagtttagcgagacagatagatgcgatgcatgttgatgta
tctataacgtctctgtctatgtctcctaacatggatgtgttggctaccactcatgttgat
caaaatggcgtctacctctgggttaatcaatttttgttctcgacctcaacaaatattgaa
aattatgcaagtgggaaacacgtccggaatgtatgtttgccagctgtttcatcagtggaa
agatctgaggaagagcaagctcatgattcgggagactcaaatcagtctaatattaaacct
tttgtcataatggatcatcaaataccaaatctgatcaccctttccttgcttccaaggagt
caatggcaaagtttgacaaatcttgatattataaaggttcggaacaaaccaattgagccg
ccaaagaaacctgagaaggcacctttcttcttaccgtctgttccatccctttctggggag
atattgtttgagcctcctgccagcagtaaagaaacagacagcagtaccactgagaacaca
aagcataagaagatggcggaactctcctctcaattgggtcttcttttacaatcttgtgga
gaaacaaagaactattcggcttttactgactacatgaaaggcctgtcaccgtcatcttta
gacatggaactacgactactacagataatagatgatgaagagtcagaagatctggagcag
agacctgagcttcagtccatttcatcgctgttggattatttcattcatgagctttcctgc
aggaataactttgagtttatccaggctattctgaaattatttttgaagatacatggtgaa
acaatacggcggcactcaactcttcagagcaaagtaaagaagctccttgaggtccagagc
ttagtttggcagaagatcgacaagatgtttcagggtgcacgatgcatggttacattcctc
agcaactcacagttttag
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