Panicum hallii (Hall's panicgrass): 112889142
Help
Entry
112889142 CDS
T07366
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112889142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112889142
03036 Chromosome and associated proteins [BR:
phai03036
]
112889142
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112889142
Coactivators
SAGA/TFTC/STAGA complex
112889142
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
112889142
STAGA complex
112889142
TFTC complex
112889142
SAGA complex
112889142
SLIK complex
112889142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_WDR19_1st
NAM-associated
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
RecX_HTH3
MADF_DNA_bdg
Beta-prop_IP5PC_F
PALB2_WD40
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
112889142
NCBI-ProteinID:
XP_025811416
LinkDB
All DBs
Position
4:complement(4319359..4332158)
Genome browser
AA seq
1096 aa
AA seq
DB search
MEDEQMDKKVQEYLQRKGLRVTELAPPGDRGRLPASVPPNVALASMPGGFLSFPPNGHAY
FAPPWPPQPLPVSMAQHAALASKSKPAINIDDGDDVRTEKRLSWKPDEDLRLVRAWLNCS
NDPVSGNGKKNEQYWGDVLAFYNSTTSTKRKRKVKHLKDRFQKIKRWVGFFCWSLKKAAS
VEENSQSDDQLIEKALQFYLDDYKEGPFIVLHCWKALRDEPKWHAVLEDLEKSNKRKLGD
EGEVGNSTPTSEDTREKEHPTEEKEAKKQCNGKGKVKANDKGLDEDIKKCMDIHAATKKR
HEEFIKVQLRVSDAKVEAARLKREAAMLKTYNSFMGMDTREMTNELKAEHAIGLKLLREK
LFGNNNNGYQGWGGRSTVGTGRRALRVDDSKHRGVRPADGVVVCTSRPPNGRDVFVRELA
GARFAAPPAPPPPPPPAAAMEDEEMEKKVQQYLQRKGFRLTELALQEERNRLSTSAISDV
ALERSDNDPARYHDGYSKLRTWAYSSLDQYKHELLRILYPVFIHCFMDLVAEGHMQEARS
FFHTFREDHEVMHSRDLQKLEGILSPSHLEEMELARSLRQNKFKIKLCEYSYELLLQYLQ
KTQALVVLGVINERITFEVSPGQPSLISDDADVVALIGTSKDLAKQINQKEVHWGLLEDS
VEERMEKALAESDKIEAESKDADAEDNKKRNAEGGKQGASLKKTKKDKLAGATGKNVRTE
TSMVSVAPRVKPELPLPTTPIEVEQSILEDLRNRAQLNSLALPSVSFYTFLNTHNGLNCS
SISHDGSLVVGGFSDSSVKVWDMSKIGQPAKTSSSLGENGSSQGERMSTVDEGKRPYTLF
QGHSGPVYSVAFSPFGDFLLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHY
FASASHDRTARIWSMDKIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTG
ECIRMFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTGRCVSPLLGHSSCVWTLAF
SCEGALLASGSADCTVKLWDVTSSTKALKTEDTKGGSGSRLRLLKALPTKSTPVYSLRFS
RRNLLFASGALSLSSS
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgagcagatggacaagaaggtgcaggagtacctgcagcgcaagggcctgcgc
gtcaccgagctcgcgccgccgggggaccgcggccgcctccctgcctccgtgccgcccaac
gtcgcgctcgccagtatgcctggtggttttctaagctttcccccaaatggtcatgcttat
tttgcaccaccatggccaccacaaccacttcctgtttcaatggctcaacatgctgcattg
gcttcaaaaagcaaacctgccatcaacattgatgatggtgatgatgttaggactgaaaag
cgcctgtcatggaaaccagatgaagacttgagattggtgcgcgcttggttaaactgttcc
aatgaccctgtcagcggtaatggcaagaaaaatgagcaatactggggagatgtacttgca
ttctacaacagcactacgtctacaaaacggaaaaggaaagtgaagcatcttaaagatcga
tttcaaaagattaagagatgggttgggtttttctgctggtcattgaagaaggctgcatca
gttgaagaaaacagtcaatcggatgaccagttgatagaaaaggctctgcaattttatttg
gacgactataaagaaggcccattcatagttctgcattgctggaaggctctccgtgacgaa
cccaagtggcatgcagtcttggaggaccttgagaaatcaaacaaaaggaaacttggtgac
gagggagaggtggggaacagcacacccacatctgaagataccagagaaaaggaacatcca
acagaggagaaagaagctaagaaacaatgcaatggcaaaggcaaggttaaggctaatgac
aagggtttggatgaagatataaagaagtgcatggatattcatgctgcaactaaaaaacgc
catgaagaattcataaaggtccagctgcgggtttctgacgcaaaggttgaggcggcgagg
ctcaagagggaggctgctatgctgaaaacatacaattcttttatgggcatggatactagg
gagatgactaatgagctgaaagctgagcatgcaataggcttgaagcttctgagagagaaa
ttgtttggcaacaataataacgggtaccaaggctggggcggccggagcaccgtcggcacc
ggacgccgcgcgctccgcgtcgacgatagcaagcaccgaggggtgaggccggccgacggc
gtggtcgtctgcacctcccgcccgcccaacgggcgggatgtcttcgtgagggagctcgcc
ggcgctcgattcgctgcgccccccgcccccccccccccccccccccccgcagcggcaatg
gaggacgaggagatggagaagaaggttcagcagtacctgcagcgcaaggggttccggctc
accgagctcgcgctgcaggaggagcgcaatcgcctctccacctcagccatttccgatgtt
gcgcttgaaaggtctgacaatgatccggcaagataccatgatggatatagtaaactaaga
acatgggcatatagttctcttgatcaatacaagcacgaattacttcgcatcctttaccca
gtttttatccattgcttcatggatctagtggcagagggacatatgcaggaagcgcggtca
tttttccatacatttcgggaagatcatgaagtgatgcactcaagggatcttcagaagctg
gagggaattctctctccttcacatttggaggaaatggaactggcccgttcgttaaggcaa
aataaatttaaaattaagttgtgtgagtattcatatgaattgcttctccagtatctccag
aaaacacaagctcttgtggtgctgggagtaatcaatgagcgcataacttttgaagtatct
cctgggcagccctcattaatctctgatgatgcggatgttgttgctctgattggaacaagt
aaggacttggcaaaacagataaatcagaaggaagtacattgggggttgcttgaagattcc
gttgaagagcgaatggagaaggcactagcagaatctgataaaattgaagctgaaagcaag
gatgctgacgcagaagataacaagaaaagaaacgcagaaggtggaaagcaaggtgcttct
cttaagaagaccaagaaggataagcttgcaggtgcaactggaaaaaatgtcagaactgaa
acaagcatggtttccgtggcacctcgagtgaaaccggagctacctcttccaacgacgcct
attgaagttgaacaatcaattcttgaggacttgcggaaccgtgcccagttgaatagtttg
gcattgccgtctgttagcttctacacatttcttaatacacataatggattaaactgctca
tcgatatcacatgatggatcgttggttgtgggtggcttttctgattcgtcagtaaaggtt
tgggatatgtcaaagattggtcaaccagcaaaaacttctagttcactgggggagaatgga
tcttcccagggtgaacgcatgtcaacagtagatgagggaaaaagaccctatacactattc
caaggtcattctggaccagtttattccgtggcctttagcccttttggggattttctcctg
tcatcatcttcagactcgacaatcagactgtggagcaccaagctgaacgccaatcttgtc
tgttacaaaggacacaactaccctgtttgggatgtccaattcagcccagttggccattat
tttgctagtgcttcgcatgacaggactgctagaatctggtcaatggataaaattcaacct
ttgcgaataatggccgggcatctttctgatgttgattgtgtccagtggcatgtgaactgt
aactacattgccaccggctctagtgacaaaactgtaagactatgggatgttcagacgggt
gaatgtatacggatgtttattggtcataggagtatggtcttgtcactggcgatgtcaccc
gatggacgatacatggcctctggtgatgaagatggaaccatcatgatgtgggatctatca
actggtcgctgtgtttcaccactgctaggacacagttcttgtgtgtggacacttgctttc
agctgtgaaggggcattgcttgcatctggatcagctgactgtactgtaaaactctgggat
gtcacttccagcacaaaggccctgaagacggaggacaccaaaggtggttccggtagccga
ctaaggctgctcaaagctctccctacaaaatctactcctgtttatagcctgcggttctct
cggaggaatcttctgtttgcatccggtgctctctcgctaagctcctcgtaa
DBGET
integrated database retrieval system
