Panicum hallii (Hall's panicgrass): 112889292
Help
Entry
112889292 CDS
T07366
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03022
Basal transcription factors
phai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112889292
09124 Replication and repair
03420 Nucleotide excision repair
112889292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112889292
03400 DNA repair and recombination proteins [BR:
phai03400
]
112889292
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112889292
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112889292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
112889292
NCBI-ProteinID:
XP_025811634
LinkDB
All DBs
Position
4:complement(908710..915722)
Genome browser
AA seq
462 aa
AA seq
DB search
MPQVMVVARNFMDMVAALPASKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVLAPVTA
AAMEEWVLNEYAAKHRVSIDKLLQLRVFVEVRDRRKEVSYKMNQKFQGNMQKYLVDGGSL
PREPIPLSVTGRLPASADLEAYALDQWECFLLQLINSSQVEKGTSFSSSMMKTFQRGLLS
SRDGEAPKLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHKLGA
PYFLFALFMFQAYSLNTLTDVQRIAIRDLAELGLVKLHQGRKDSWFIPTQLATNLSASLS
DSSSSKEGFVVVETNFRMYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESIYGAFEN
GITAEQIISFLKQNAHPRVADKIPAVPENVTDQIRLWESDRNRVEMIPSHLYEDFPSKEW
FEQCCDHARDHGYLLWEDSRRMRLIVRGEFHPEMREFLRRQR
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggtaatggtggtggcgcggaacttcatggatatggtggctgcgctgcctgcc
tccaagcttgatatgctctatgactcggccttcatctgtgaggctgtactcaggtcactt
ccaccactggcgaagaaatatgcactgcagatgctgtacgtgttggcacccgtgaccgct
gcagctatggaagagtgggtgctcaatgaatatgctgccaagcatagggtttccattgat
aagctgctccaactcagggtctttgttgaagtgcgcgatagacgaaaggaggtgagctac
aagatgaatcaaaagttccaaggtaacatgcagaagtatttggttgacggtggaagttta
ccaagggaaccgataccgttaagtgtcactggtagattgcctgcgtcagcagatctggaa
gcctatgctcttgatcaatgggagtgcttcttgttgcaattgatcaattcatctcaagtc
gaaaaagggacaagtttcagctcctccatgatgaagacatttcagcgtggccttctgagt
tcaagggatggtgaagctccaaagttgactgagaatggcttccaatttcttctgatggaa
acaaatgcacaactttggtacataatgagagaatacatttcctctgcagaggaacgtgga
gtggaccctacggagctgatatcatttctcttggaacttagttttcataaattgggagcg
ccatactttctgtttgccttgttcatgtttcaggcttatagtttgaacactctgactgat
gtccaaagaattgccatcagggatcttgcagagttgggattagtcaaactgcatcagggt
cgaaaggatagctggttcattcctacccaattggctacaaatctctcagcaagcttgtcg
gattcatcatccagcaaagagggctttgtggttgtggagacaaactttagaatgtatgca
tactctacttccaaattgcactgtgaaattctgcgccttttctcaagggtggagtatcaa
cttccaaacctcattgtgggagctattacaaaagaaagtatttatggtgcttttgagaat
ggaataactgctgaacagataatttcatttctcaagcaaaatgctcaccctcgtgttgct
gacaagatacctgctgtcccggagaatgtcacagatcagattaggctgtgggaaagtgat
cgtaacagggttgagatgattccatcacatttatatgaagattttcctagcaaggaatgg
tttgaacaatgctgtgatcacgcaagggatcatggatacttgctctgggaggactcgagg
aggatgaggttgattgtgcgaggggagttccaccctgaaatgagggagttcctccgcagg
caaagatga
DBGET
integrated database retrieval system
