Panicum hallii (Hall's panicgrass): 112889365
Help
Entry
112889365 CDS
T07366
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112889365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112889365
03041 Spliceosome [BR:
phai03041
]
112889365
03009 Ribosome biogenesis [BR:
phai03009
]
112889365
03016 Transfer RNA biogenesis [BR:
phai03016
]
112889365
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112889365
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
112889365
Spliceosome [BR:
phai03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112889365
Complex C
U4/U6.U5 tri-SnRNP related factors
112889365
Ribosome biogenesis [BR:
phai03009
]
Eukaryotic type
Pre-60S particles
Helicases
112889365
Transfer RNA biogenesis [BR:
phai03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
112889365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
112889365
NCBI-ProteinID:
XP_025811734
LinkDB
All DBs
Position
4:complement(52587604..52595118)
Genome browser
AA seq
999 aa
AA seq
DB search
METLKRKAPDGPAPAGNASPLKAPRADAAEPPARTTLAAAEPIACVHDVSYPEGCDAAAS
ASRVLAGGAEGSEPAKKFPFPLDPFQAEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMS
LRNQQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYK
GSEIMREVAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAK
VHKQPCHIVYTDYRPTPLQHYVFPSGGDGLYLVVDEKGKFREDSFQKALNALVPASDGNK
KKENGKWQKGIVAGKSSEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLN
EDDEKANIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQ
EGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGRAGRRGIDQR
GICILMVDEKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQMRSEDGDPEKLLRFSFYQF
QADRALPDLEKQIKELESDRNSMVIEEEESLKDYYDLLQQYKSLKKDVRDIVLSPKHVLP
FLQPGRLVRILCGTDESATFSIDENVSWGIIINFEKVKSNGEDRRPEDYDYRVDVLTRCS
VSKDSSGKKTMKIIPLKQRGEPVVISLPLSQIDGLSSIRMYIPKDLLPVEARENTLRKVE
EVLSRFAKDGVPLLDPEEDMSVQSKSFRKATRRIEALEGLFEKHDIHSSPHIQQKLKVLH
AKQELSAKIKSIKKTMRSSSALAFKDELKARKRVLRRLGYATGDDVVEVKGKVACEISSA
DELTLTELMFSGTLKDATVEQMVALLSCFVWQEKLQDAPKPREELDLLFYQLQETARRVA
NLQLECKIQIDVESFVNSFRPDIMEAVYSWAKGSKFYQIMEMTQVFEGSLIRAIRRLEEV
LQQLILASKSIGETELEAKLEEAVSKIKRDIVFAASLYL
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggagactctcaagcgcaaggccccggacggacctgcgcctgccggcaacgcctcccct
ctcaaggcgccgcgcgcagacgccgcggagcctcccgcccgcaccaccctcgccgccgcg
gagcccatcgcctgcgtgcacgacgtctcctatccggaaggctgcgacgcggccgcctct
gcctcccgcgtgcttgccggcggtgctgagggctctgagcccgccaagaagttccccttc
ccgctcgacccgttccaggccgaggccatacgctgcctcgacaacggcgaatccgtcatg
gtttcagctcatacatcagctggaaagacagtggtcgccttgtatgcaatagcaatgtct
ctgcgcaaccaacagcgtgtcatctatacgtctccaatcaaggcattgagcaaccaaaaa
tacagagagttcaaagaagagttctctgatgttggtctcatgactggggatgtcacaatc
gagccgaatgcctcctgcctggtcatgaccacggaaatttggcggagcatgcagtacaaa
ggatctgagatcatgagggaagttgcttgggttatatttgatgaggtgcattacatgcgg
gatagagagagaggagtggtgtgggaggagagtatagtgatggctcccaagaactcacgt
ttcgtgttcctctcagctactgtacctaatgccaaggaatttgctgattgggtagctaag
gtacataaacaaccttgccatatagtatacaccgactaccgacccacacctctccagcac
tatgtatttccttcaggaggggatggattgtatctggtagtggatgagaagggcaagttc
agagaggacagtttccagaaagcattgaatgcgcttgtccctgcaagtgacggtaacaag
aagaaggaaaatgggaagtggcagaaaggtatcgtggcaggcaaatctagtgaggaaagt
gacatattcaagatggttaaaatgataattcagcgtcaatatgatcctgtgatacttttc
agctttagcaaaagggaatgcgaatttcttgctatgcagatggctaagatggacttgaat
gaggatgatgagaaggcaaacattgaaacaattttttggagtgctatggatttgctttct
gatgatgacaaaaagcttccacaggtttcaaacatgctacccttactgaaacgtggtatt
ggtgtgcatcattctggtctgttgcccatcttgaaggaagtgattgagattctcttccag
gagggcctcatcaagtgtttgtttgccacagaaacattcagtattgggctgaacatgcct
gcaaagactgttgtgtttaccaatgtgcgaaaatttgatggagaccgattcagatggttg
tcgagtggtgagtacatccagatgagtggccgtgctggtcgtcgaggtattgatcagcgt
ggtatctgtatcctgatggtagatgagaaaatggagccttcaactgccaaaatgatgctg
aaaggaagtgctgatagtttgaacagtgcctttcatctgagctacaatatgctgttaaat
caaatgagatctgaggatggagatccagaaaagcttcttcggttttcattttaccaattc
caggctgatcgagctctccctgatcttgagaagcaaatcaaggaactggaatcagatagg
aattccatggttattgaggaagaggagagcttgaaggattactatgatctcttacagcag
tacaaaagtttgaagaaggatgtccgtgatattgtcctatctccaaaacatgttctgcct
ttcttgcaacctggaaggcttgtccgtattctatgcggcacagatgagtcagccaccttc
tccattgatgaaaatgtctcatggggaattattataaactttgaaaaagtgaaatccaat
ggtgaagataggaggcctgaagattatgattatagagttgatgtccttaccagatgttct
gtaagtaaggatagcagcggaaagaaaacaatgaagattattcctctgaaacaacgtgga
gaaccagttgttatttcactgccactttcacagattgatggactaagcagcatccggatg
tacatacctaaggatcttctgcccgtagaagctcgagaaaacaccttgaggaaagttgaa
gaagtgctgtcaaggtttgctaaagatggggtacctctattggatccagaagaggatatg
agtgtacaatcaaaatcttttcggaaagctaccagaagaatagaagctctggagggctta
tttgagaagcatgatatccatagttctccacatatccagcaaaaacttaaagtcttgcat
gctaagcaagaattatcagctaaaataaagtccatcaaaaagacaatgcggtcttccagt
gctttagctttcaaggatgagctcaaggcccggaaacgggttcttcgcaggctgggatat
gctacgggcgatgatgttgtggaagtgaagggcaaggtggcctgcgagataagctcagct
gatgagctaacattgacagagcttatgtttagtggcactttgaaggatgctaccgtagaa
cagatggtggccctgctttcttgctttgtttggcaggagaagctccaggatgccccaaag
ccaagggaggagcttgatttgctcttctatcaattgcaggagacggctagaagggttgct
aaccttcagcttgagtgcaagatccaaattgacgtggaaagctttgtgaattctttccga
cctgacataatggaagcggtgtattcatgggccaaagggtcgaaattctaccaaatcatg
gagatgacccaagtgtttgaaggcagcttgatcagggccatcaggaggctggaggaggtt
ctgcagcagctaattctggcatccaagtcgattggggaaactgaattggaagcaaaactt
gaggaggcagtcagcaagatcaagagggatatagtattcgctgcatctttgtacttgtaa
DBGET
integrated database retrieval system
