Panicum hallii (Hall's panicgrass): 112889555
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Entry
112889555 CDS
T07366
Name
(RefSeq) THO complex subunit 4B-like isoform X1
KO
K12881
THO complex subunit 4
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03013
Nucleocytoplasmic transport
phai03015
mRNA surveillance pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112889555
09122 Translation
03013 Nucleocytoplasmic transport
112889555
03015 mRNA surveillance pathway
112889555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112889555
03041 Spliceosome [BR:
phai03041
]
112889555
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112889555
TREX complex
112889555
Spliceosome [BR:
phai03041
]
Complex C
Other components
EJC/TREX
112889555
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112889555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
112889555
NCBI-ProteinID:
XP_025812046
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All DBs
Position
4:49300574..49303302
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AA seq
250 aa
AA seq
DB search
MAGALDMSLDDLISKNKKTHPRPSGRGPTSGGGGPAPTAPRRRFNARAAAAPYSRGTTFP
FQAQARRPMAYAGYGYGAAQPQPPMDAPTKLYISNLDYGVSNDDIKDLFSDVGDIQRYSI
NYDRSGRSKGTAEVVFSRRSDALAAVKRYNNVQLDGKPMKIEIIGTNIEAPPTATFSFNP
PSGNFNVPFKSRPGRGGDGGWPRGRGGFGGRGRGQGSRGRGRGGRGSEKVSAEDLDADLA
KYHAAAMETS
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
atggccggtgccctcgacatgtccctcgacgatctcatctcgaagaacaagaaaacccac
ccgcgccccagcggccgaggcccgacctccggaggcggaggccccgcacccacggcaccg
cgccgccgcttcaacgcccgcgccgccgcagccccgtactcccgcggcaccactttccct
ttccaggcgcaggcgcggcggcccatggcttatgctggatacggatacggagccgcccag
ccccagccgccgatggacgcgcccaccaagctctacatctccaacctcgactatggcgtc
tccaacgacgacatcaaggacctattttctgatgtcggcgatatccagcgttactccatc
aactatgacaggagtggaagatcaaagggaaccgcagaggttgtcttctcaagaaggtct
gatgctctagctgctgttaagaggtacaacaatgtccagcttgatggcaaacctatgaaa
attgagatcattgggacaaatattgaggcaccaccaacggctaccttctccttcaaccca
ccatctggaaacttcaatgtgccttttaaaagcaggcccggaagaggtggtgatggagga
tggcctaggggtagaggtggattcggtgggcgtggacgagggcaagggagccgtggacgc
gggaggggagggcgtggcagtgagaaagtttctgctgaagatctggatgcggacttggca
aagtaccacgcagcagcaatggagaccagctaa
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