Panicum hallii (Hall's panicgrass): 112889619
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Entry
112889619 CDS
T07366
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform-like
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112889619
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
phai01009
]
112889619
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112889619
03036 Chromosome and associated proteins [BR:
phai03036
]
112889619
Protein phosphatases and associated proteins [BR:
phai01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
112889619
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
112889619
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
112889619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_RIG_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
ComGF
Motif
Other DBs
NCBI-GeneID:
112889619
NCBI-ProteinID:
XP_025812129
LinkDB
All DBs
Position
4:complement(8007283..8015582)
Genome browser
AA seq
514 aa
AA seq
DB search
MDTPGSGDQGEASQPQPQPQPLDWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATG
DKGGRVVLFERTDVRDNATRRELERQDVPVTRHPEFRYKTEFQSHEPEFDYLKSLEIEEK
INKIKWCQTSNNALSLLSTNDKTIKYWKVQEKKLKRVSVMNLDTSQSLGSSTAIASTSSS
KAPLPNGGCSDKFNCLNTNLSFPPGGYPSLRLPVVTSLEASPVARCRRVYAHAHDYHINS
ISNNSDGETFISADDLRINLWNLEINSQSFNIVDVKPTNMEDLTEVITCAEFHPIHCNTL
AYSSSKGSIRLIDLRQSALCDNHSKIFEEHEAPGSRSFFTEIIASISDIKFSRDGRHILS
RDYMTLKLWDLNMDSGPVSTFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSY
GNIFRVFGCTPGSIEATTLEASRNPMRRQIANPTRPTRTLTSFTRGVRRGGENQGVDANG
NSLDFSTKLLHLAWHPTENSIACAAANSLYMYYA
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggataccccggggtccggcgaccagggtgaggcgtcgcagccgcagccccagccccag
ccgctggactggcggttcgcgcaggtcttcggcgagcgcgccgccggcgaggacgtccag
gaagttgacattatctctgcaatcgagtttgataaatctggtgatcatcttgccaccgga
gataaaggaggcagagtcgtattgtttgaaaggacagatgttcgggataatgcaacccgg
agagaactagagagacaggatgttccggttactagacacccagagttccgctacaaaacc
gaattccagagtcatgaacctgagtttgactacctaaaaagtttggaaatagaggaaaag
atcaacaagatcaagtggtgccagacatccaacaatgctctctcccttttgtctacaaat
gataagacaatcaaatactggaaggtgcaagagaaaaaactaaagcgagtttctgtcatg
aatttggacacttctcaaagtttaggaagtagtactgctattgcaagtacgagtagttct
aaggcgcctcttccaaatggtggttgttcggataagttcaattgcctgaacactaatctc
tcatttccacctggaggttacccatcactgcgtttgcctgtggttacaagtctagaggca
agccctgttgctagatgtcgacgtgtatatgctcatgctcatgactaccatataaattct
atctcaaataatagtgatggggagacattcatatcagcagatgatctgcgaataaattta
tggaacttggaaataaacagccaaagctttaacattgttgacgtgaagcctacaaacatg
gaagatctaacagaggtgattacatgtgcggagttccacccaatccattgtaatacactg
gcctatagtagctcaaagggctctatccgacttattgatctacgacaatcagcactatgc
gacaaccattccaagatatttgaagaacacgaagcacctggatcaagatccttctttaca
gagattattgcgtcaatttcggacataaagttttcaagagatggaagacatattcttagt
cgtgattatatgactctcaagctatgggatctaaacatggattcgggccctgtttcaacc
ttccaagtccatgaacatttaagacctaagctttgtgatctgtatgagaatgactcaatt
tttgacaagtttgagtgttgtcttagtggggatggacttcgtgttgcaactggttcttat
ggtaacatatttcgtgtttttggttgtactcctggaagcatagaggcaaccactttggaa
gcaagtaggaacccgatgaggcgtcagattgcaaatcccacaaggcccacaaggacactg
acttcttttacccgtggtgttcggagaggtggagaaaaccaaggcgttgatgccaatgga
aattcgcttgacttctcaacaaagttgctccatctcgcatggcacccaactgagaattcc
atcgcatgtgctgctgcaaatagcttgtatatgtattatgcgtag
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