Panicum hallii (Hall's panicgrass): 112889648
Help
Entry
112889648 CDS
T07366
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112889648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phai03041
]
112889648
Spliceosome [BR:
phai03041
]
Complex B
Other components
Prp19-related factors
112889648
Complex C
112889648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_12
zf-CCCH_2
RRM_occluded
zf-CCCH
zf-CCCH_3
RRM_YTH1
zf-CCCH_10
RRM_3
zf-CCCH_4
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
112889648
NCBI-ProteinID:
XP_025812164
LinkDB
All DBs
Position
4:49606872..49610583
Genome browser
AA seq
497 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE
EHDRRARAGIDYDSSYGKACPNDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVAMKLLSKAGEMPSLTPPDDETIRTLYIGGLDSRVT
EQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGK
PQAPKPEEDESGRQGQVSHGGLLPRAVISQQQGSDQPQPPGMEGQHQPPAPASYYFNIPA
PPAAERTVYPSMDPQRMGAIVKSQDGEGKPGPQQAGQAQPSSSSGQGGYPAPPPYYHGQY
PPYYPPPPPYGSYMQPPRMHYPPQYPPYQPMLAPPAQAHASSSQQPAQAGQQPPHGPPAQ
AQQPAPGPSAQQQPSQN
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaccggcttctgcgggacgcgcaggcggacgggtgggagcggtcggacttcccc
atcatctgcgagtcatgcctcggcgacaacccctacgtccggatgttaagagcagaatat
gacaaagagtgcaaaatatgtgcacgtccgtttactgtcttccgctggagacctggtcgg
gatgcaaggtacaagaaaacagagatctgccagacatgttgcaagctgaaaaatgtctgc
caggtctgcctgctggatcttgaatatggtctaccagttcaggtccgggatacagcgctc
gctatcaattcgaacgatgcaattccaaggagtgatgtcaatcgtgaatattttgcagaa
gagcatgatcgaagggccagagctggcatagactatgattcttcctatgggaaggcctgc
ccaaatgataccattctgaagcttcagaggacagcaccatattacaagaggaacagggct
cacgtttgcagtttctatgtgcgtggtgaatgtactagaggtgctgaatgcccatatcga
catgagatgcctgaaactggggagttatctcagcagaacatcaaagatcgttactatgga
gttaatgatccagttgcaatgaaacttttgagtaaggcaggtgagatgccatccctgaca
ccaccagatgatgagactataaggacactatacattggtggactcgatagcagagtaact
gaacaggatttgagggaccagttttatgcacatggtgagatcgagtccataaggatggtg
cttcaacgtgcatgtgcatttgtgacatacactacaagagaaggcgctgagaaggctgca
gaggagcttgctaacaaactagtcatcaagggtgtgcgactgaagctcatgtggggcaag
cctcaggctccaaagcccgaagaggatgaatcggggaggcaggggcaggtttcccacgga
ggactgctccctagggctgtcatatctcagcagcagggcagcgaccagcctcaacctcct
gggatggagggccagcatcaaccaccagcaccagcatcatactactttaacattccagct
ccaccggcagcagagcggactgtgtacccgtccatggatcctcagaggatgggtgctata
gttaagtcacaggatggcgaaggcaaaccaggaccgcagcaagctggacaagctcagcca
tcaagcagctcaggacagggtggctatcctgcgccaccaccgtactaccatggtcagtat
ccaccatactatccacctccaccaccatatggtagctatatgcagccacctcgcatgcac
tacccaccccagtatccaccataccagccgatgctagcaccaccagcacaagctcacgca
agttcatctcagcaaccagcgcaagcaggacagcagccacctcatggccctccggctcag
gcgcagcagccggcgcctggcccttcagcgcagcagcagccatcccagaactga
DBGET
integrated database retrieval system
