Panicum hallii (Hall's panicgrass): 112890047
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Entry
112890047 CDS
T07366
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai04120
Ubiquitin mediated proteolysis
phai04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112890047
04120 Ubiquitin mediated proteolysis
112890047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phai04121
]
112890047
Enzymes [BR:
phai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112890047
Ubiquitin system [BR:
phai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112890047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_11
zf-RING_16
zf-RING_5
FlxA
zf-HC5HC2H
zf-C3HC4_4
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
112890047
NCBI-ProteinID:
XP_025812657
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Position
4:complement(40637143..40641659)
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AA seq
506 aa
AA seq
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MIRLQTYAAFSLLATASAVYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQL
VKRLFLGSLREAEVERLNEQSWREVVEILFAVTIFRQDFSVSFLAMVAALLLVKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFMAFLLIVDCLFLSNSLRSLIEKREASVAIFFSFEYM
ILATSTVSTFVKYVFYVSDMLMEGQWEKKAVYTFYLELISDLVHLSLYMLFFIAIFLNYG
VPLHLIRELYETFRNFKIRVADYVRYRKITSNMNERFPDATAEELDASDATCIICREEMT
TAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIIPPDNGRAASARQHGAQPGVQPAAAGT
GTPAAEGAAGDNMSGRQAKLEAAAAAASLYGRSFAYPPANILNRSGPPQSKSSTPQSEAS
SSNQSQNDQELQFQNTSDGFAPLPFNAHGAIGSGTITRDLENSLQRAQENFIKSQIEMLQ
IQLQMVQRGAAVPATNNENAEHTKND
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgatccgtcttcagacatacgcagcgttcagcctgctggcgaccgcgtccgcggtatac
tacgccttcagcagccgggagcagttctacccggcgatggtctacctctccacctccaag
atctgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcgtagcctggcagctc
gtcaagcgcctcttcctgggctcgctccgggaggctgaggtcgagcgcctcaacgagcag
tcctggcgggaggtcgtggagatcctcttcgcggtcaccatcttccgccaggacttctcc
gtctccttcctcgccatggtcgccgcgctgctcctcgtcaaggcgctgcactggctggca
cagaagagggtcgagtacatcgagaccacgccctccgtgcccatgctctcgcacataagg
atcgtctccttcatggcgttcctgctcatcgtcgactgcctcttcctgtcaaactcgctc
aggtcgctcatagagaagcgggaggcgtcagttgccatcttcttctcctttgagtatatg
atactggcaacatccacagtatcaacatttgtgaagtatgtattctatgtcagtgacatg
ctaatggaaggtcaatgggagaaaaaggcagtgtacacattttacttggagctcattagt
gaccttgtgcacttgtcactatacatgctcttcttcatagctatcttcctgaactatggt
gtcccgctgcacttgattcgtgagctatatgagaccttccgcaacttcaaaattcgtgtt
gcagattatgtacgctacagaaaaatcacttccaacatgaatgaacgctttccagatgct
acagcagaggagctcgatgcgagtgacgctacatgtattatttgccgtgaggagatgact
acagcaaagaagctgctttgtgggcatctgttccatgtgcattgtctaaggtcatggcta
gagcgccagcacacttgccccacgtgcagagctccaatcattccaccagataatggacgt
gctgcatcagctcgacaacatggagctcaacctggagttcagcctgcagctgcaggtact
ggtactccagccgcagaaggtgcagcaggtgacaacatgagcgggcgccaagcaaagctt
gaagctgctgcagcagctgcttctttatatggaagatcttttgcttatcctccagcaaac
atcctaaataggtcaggtcctccccagtctaaatcgagcacaccacaatctgaagcaagt
agctccaatcaatcacagaacgaccaagaactgcagttccagaacaccagcgatggtttc
gcacctctgccttttaatgcacatggtgccattggttcaggaacaatcaccagggatctt
gaaaattcactgcagagggcacaagaaaattttataaagagccagattgagatgctacaa
atccagctgcaaatggtccagcgtggtgctgctgtgccggccactaacaatgagaatgcc
gagcacacaaagaatgattga
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