Panicum hallii (Hall's panicgrass): 112890423
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Entry
112890423 CDS
T07366
Name
(RefSeq) cell division cycle 20.2, cofactor of APC complex-like isoform X1
KO
K03363
cell division cycle 20, cofactor of APC complex
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112890423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phai04121
]
112890423
03036 Chromosome and associated proteins [BR:
phai03036
]
112890423
Ubiquitin system [BR:
phai04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
APC/C
Target recognizing subunit
112890423
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Sister chromatid separation proteins
APC/C complex
112890423
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_EML
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
RMC1_N
WDR54
Beta-prop_VPS8
Beta-prop_RIG_1st
CFAP43_N
Beta-prop_SCAP
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT80_2nd
Motif
Other DBs
NCBI-GeneID:
112890423
NCBI-ProteinID:
XP_025813123
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Position
1:8746483..8749167
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AA seq
463 aa
AA seq
DB search
MDAGSRSISSEKSRASAAPRPPLQEAGSRPYMPPLSSGSRNPSAKCYGDRFIPDRSAMDM
DMAHYLLTEPRKDKENAAVSPSKEAYRRLLAEKLLNNRTRILAFRNKPPEPENVAAADAT
SSHHARPAKQRRHIPQSAERTLDAPELVDDYYLNLLDWGTNNVLSIALGDTVYLWDASSG
STSELVSVDEDSGPITSVSWAPDGRHIAVGLNSSDVQLWDTSSNRLLRTLRGVHEARVGS
LAWNNSILTTGSMDGKIVNNDVRIRNHMVQTYEGHSQEVCGLKWSGSGQQLASGGNDNLL
HIWDVSMASSMPSAGRNQWLHRLDDHMAAVKALAWCPFQSNLLATGGGGSDRCIKFWNTH
TGACLNSVDTGSQVCSLLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRVLF
MAQSPDGCTVASAAADETLLPRFSKLSFNFLIEREHYEFIFSY
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atggacgcaggctcccgctcgatctcatcggagaagagccgcgcgtcggcggcgccgcgg
ccgccgctgcaggaggccggctcccggccctacatgccgccgctcagctcggggtcgcgc
aacccatcggccaagtgctacggcgacaggttcatcccagataggtcggcgatggacatg
gacatggcgcactacctgctcacggagcccaggaaggacaaggagaacgcggcggtgtca
ccgtccaaggaggcgtaccggaggctgctcgccgagaagctgctcaacaaccggacgcgg
atcctcgccttcaggaacaagccgccggagccggagaacgtcgcggctgccgacgcgact
tcctcccaccacgccaggccggccaagcagcggcgccacattccccagtctgcggagagg
actctggatgcaccagagctcgttgatgactactacctcaacctgctcgactgggggacc
aataacgtgttgtccattgctctgggtgatacggtctacctgtgggacgcctcgagcgga
tccacttctgagcttgtgtccgtcgacgaggacagcggtcccatcaccagtgtcagctgg
gctcccgacggccggcacattgctgttgggctcaactcgtctgacgtccagctctgggac
accagctctaaccgattgttgagaacactcagaggtgtgcatgaggcaagagttggctca
ctggcatggaacaacagcatcctgacgactggtagcatggacggcaagatcgtcaacaac
gacgtgaggattaggaaccacatggtgcagacatacgaggggcacagccaggaggtttgc
gggctcaagtggtctggatcagggcagcagctggccagtgggggcaacgacaaccttctg
catatttgggatgtgtcgatggcatcctccatgccttctgccggccgcaaccagtggttg
cacaggctcgacgatcacatggccgctgtgaaggcactggcatggtgcccattccagagc
aacttgctggcaactggtggtggtggcagcgatcggtgcatcaagttctggaacacacac
accggtgcatgtctgaactctgttgacactggttcacaggtttgctcccttctctggaac
aagaatgagagagagctgctgagttcacatggattcacacagaaccagctaaccttgtgg
aagtacccatcaatggtgaagatggccgaactcactggccatacctctcgtgtgcttttc
atggctcagagccctgatggttgcacagtggcctcagcagctgctgacgagaccctcctt
cctagattcagcaaattgagcttcaactttcttattgagcgagaacattatgagttcatt
ttttcttattaa
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