Panicum hallii (Hall's panicgrass): 112891185
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Entry
112891185 CDS
T07366
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai04120
Ubiquitin mediated proteolysis
phai04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112891185
04120 Ubiquitin mediated proteolysis
112891185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phai04121
]
112891185
Enzymes [BR:
phai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112891185
Ubiquitin system [BR:
phai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112891185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_5
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
112891185
NCBI-ProteinID:
XP_025813905
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All DBs
Position
1:complement(48012518..48017049)
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AA seq
505 aa
AA seq
DB search
MIRLRTYAAFSLLATASAVYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCAAWQL
VKRLFLGSLREAEVERLNEQSWREVVEILFAVTIFRQDFSVSFLAMVAALLLVKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFLAFLLIVDCLFLSNSLRSLMEKWEASVAIFFAFEYM
ILATSTVSTFVKYIFYVSDMLMEGQWEKKAVYTFYLELISDLVHLSLYMLFFISIFLNYG
VPLHLIRELYETFRNFRIRIADYVRYRKITSNMNERFPDATEEELNASDATCIICREEMT
AAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIIPPDNGRAASARHGAQPGFQPAAAGTG
TSASEGAAGENMIRRQAKIEVAVAAASLYGRSFAYPPANTLNRSGPPQSTSSIPQSEASS
SNQSQKDQELQFQNTSDGLAPLPFNAHGGISSGTSTRDLEISLQKAQENFIKSQIEMLQI
QLQMVQRAAAVSVTNNESAEHTKNY
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgatccgtcttcggacgtacgcggcgttcagcctgctggcgacggcgtcggcggtgtac
tacgccttcagcagccgggagcagttctacccggcgatggtctacctctccacctccaag
atctgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcgccgcctggcaactc
gtcaagcgcctcttcctgggatcgctccgggaggccgaggtcgagcgcctcaacgagcag
tcctggcgggaggtcgtcgagatcctcttcgcggtcactatcttccgccaggacttctcg
gtctccttcctcgccatggtcgctgcgctgctccttgtcaaggcactgcactggctggcc
cagaagagggtcgagtacatcgagaccacaccctccgtgcccatgctctcgcacattagg
atcgtctccttcctggccttcctgctcatcgtcgactgcctcttcctgtccaactcgctc
aggtcgctcatggagaagtgggaggcgtcagttgccatattcttcgcatttgagtatatg
atactggcaacatccacagtatcaacatttgtgaagtatatattctatgtcagtgacatg
ctaatggaaggtcaatgggagaagaaggcagtgtatacattttatttggagctcatcagt
gaccttgtgcacttgtcattatacatgcttttcttcatatccatcttcctgaactatggt
gtcccactgcacttgattcgagagctatatgagaccttccgcaacttcagaattcgcatt
gccgattatgtacgctacagaaagatcacttccaacatgaatgaacgctttccagatgct
acagaagaagagctcaatgcgagtgacgctacatgtatcatttgccgtgaggagatgact
gcagcaaagaagctgctttgtgggcatctgttccatgtccattgtctaaggtcatggcta
gagcgccagcacacttgccccacgtgcagagctccaatcattcccccagataatggacgt
gctgcatcagcacgacatggagctcagcctggatttcagcctgcagctgcaggtactggc
acttcagcctcagaaggagcagcaggtgagaacatgatcaggcgccaagcaaagattgaa
gtggctgtagcagctgcttctttatatggaagatcttttgcttatcctccagcaaacacc
ctaaataggtcaggtcctccccagtctacatcaagtataccacaatctgaagcaagtagc
tccaatcaatctcagaaagatcaagaactgcagttccaaaacaccagcgatggtttagca
cctctgccttttaatgcacatggtggtattagttcagggacaagcaccagggatcttgaa
atttcactgcagaaggcacaagaaaactttataaaaagccagatagagatgttacaaatc
caactgcaaatggttcagcgtgctgctgctgtctcagtcactaacaatgagagtgccgag
catacaaagaattactga
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